Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00198 ATGGTAAGAGCCCCATATTTTGATGAAAATGGAACAAAGAAAGGTGCATGGAGTGAGGAAGAGGATCAAATGCTTATTGCTCACATTCAGAGACACGGTCATGCCAATTGGCGTCAACTTCCCAAAGTTGCAGGTTTAACAAGATGTGGAAAGAGTTGTAGGTTGCGTTGGATGAATTACCTGAGGCCAAATCTAAAACGAGGGAACTATACACAGAATGAGGAACAGATGATCATGGAGTTGCATACAAAGCATGGAAATAAATGGTCTCTTATAGCGGAAAGTCTACCCGGAAGATCAGACAACGAGATAAAGAATTACTGGCATAGCCACCTAAAGAAATTCTCAAGGCGCAATGAGACCAAGCTTACTCAAGAGATTGAAATGACAAAAACTTTGGAAACTTCATTTTCAATTAAAGCCAACTCCTCTTCAATTTCATCTAGTCATGTGGAATCAAACATGGACTTGTATAGAATAGAAGATGATGTTGCTTCTTGGGAAACATGGGATGGATTCAGCAACAATTTTTGGACTGAACCTTTTGTTTATGATAACACATTCAGTCAGGATTACTTTCCCATTTCATATTGTGCACTAGAGCTAGAGGATCCATATTTTATATGCTAG 630 0.3889 MVRAPYFDENGTKKGAWSEEEDQMLIAHIQRHGHANWRQLPKVAGLTRCGKSCRLRWMNYLRPNLKRGNYTQNEEQMIMELHTKHGNKWSLIAESLPGRSDNEIKNYWHSHLKKFSRRNETKLTQEIEMTKTLETSFSIKANSSSISSSHVESNMDLYRIEDDVASWETWDGFSNNFWTEPFVYDNTFSQDYFPISYCALELEDPYFIC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00198 209 FunFam MYB-related transcription factor 13 66 - -
Vifa6g00198 209 CDD SANT 69 112 IPR001005 -
Vifa6g00198 209 CDD SANT 16 61 IPR001005 -
Vifa6g00198 209 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g00198 209 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa6g00198 209 Gene3D - 69 114 - -
Vifa6g00198 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa6g00198 209 Gene3D - 7 66 - -
Vifa6g00198 209 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 148 - -
Vifa6g00198 209 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g00198 209 SMART sant 66 114 IPR001005 -
Vifa6g00198 209 SMART sant 13 63 IPR001005 -
Vifa6g00198 209 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g00198 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g00198 209 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00198 Vifa-Chr6 85398335 85399812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00198 1 114 MYB Transcription Factor Family AT5G16770 68.421 5.86e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g00198 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00198 K09422 - gmx:100781032 271.166