Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00187 ATGAGTTGGTCTTCCTTTTATCACACAGCCTCCAGGGTTTTTCATGAGCATCCCTCCTGGTCTAAGTCTCTTGTTGTATGCACTATCATCAGCGGTGGAGGTCTAGCGGCATATGGTGATACCATATCAGCATATAGCGATAGTGGTGATCAATTCCCAAAAAAGAAGGTGGTGGTTCTTGGAACTGGTTGGGCTGGAACCAGTTTTGTGAAAAGCATGAAAAACTCCTCCTATGATATTCATGTTGTTTCACCACGTAACTATTTTGCATTCACTCCTTTGTTACCAAGTGTCACTTGTGGCACGGTCGAGGCACGAAGTATTGTTGAACCTATTCGAAATATCAGCAGAAAGAGTGGTTTAGATGTTCAATTCAGTGAAGCTGAATGCTATAAGATTGATCCAAAGAACAATAAAGTTTACTGCAGAGCTACTCATGACAAAAAGTTTGGTGGAACAGAAGAATTTTCCCTTGATTATGATTACTTAGTAATTGCTATGGGAGCTCGTTCGAATACATTTAATACACCTGGTGTTGAGGAACATGCCTACTTCTTGAAGGAAGTGGAAGATGCTAAAAGAATCCGTCACAAAGTGATTAACCTTTTTGAAAGAGCGAGTCTTCCTTCTGTACCGGTGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAATCGTTGGTGGTGGTCCAACTGGTGTAGAGTTTGCAGCAGAGCTACATGATTTTGTGCATGAAGATTTGTCCAAGTTATATCCTTCTCTTAAAGACCATGTCAAGATTACTCTCCTTGAGGCTGGTGATCATATCTTAAACATGTTTGACAAGAGAATAACCGAATTTGCTGAAGGAAAGTTCAAAAGAGATGGAATTGATGTGAAATTAGGATCTATGGTTGTGAAAGTTGGTGAAAAAGAAATCTCATCGAAAGAAAGAGGAAGTGGTGAAGTTGTTACTTTACCTCATGGGATGGTAGTTTGGTCTACTGGTATTGGTGCTCGTCCTGAAGTAGTTGATTTTATGAAGCAACTTGGCCAGATTAACAGGCGCGCATTGGTGACTGATGAATGGCTTAGGGTGGAAGGGTGTGACAACGTCTATGCTCTAGGTGATTGTGCCACTATTAATCAACGTAAAGTTATGGAAGATATAGCTGTGATATTTAGCAAAGCGGACGAGGACAATTCCGGAATGTTAGATCTTAAAGAATTTCAAAATGTTGTTGGAGATATTGTTGAGAGATACCCACAGGTGGACATTTATTTAAAAAGTCAAATGAAAGACATGGCTTCTTTACTAAGTAAATCGCAGGAAAGCCCTACTACAGTTGTGGACATTGAATACTTTAAACAAGCTCTTTCCAAAGTTGATTCTCAAATGAAAAATCTTCCTGCAACCGCTCAGGTAGCTGCTCAACAAGGAGCCTATCTTGCAGACTGTTTCAATCGCATGGAATTGTGCGAGAGATATCCAGAAGGCCCTCTAAGGTTTAGAGGAACCGGACGTCATCGTTTTCATGCTTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTTGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGTTGTGGTATTCAGTATATGCAAGCAAACTAGTCAGCTGGAGAACAAGAGCTTTGGTGATATCTGATTGGGGAAGACGATTCATATTTGGCAGAGACTCAAGTCAAATCTGA 1728 0.408 MSWSSFYHTASRVFHEHPSWSKSLVVCTIISGGGLAAYGDTISAYSDSGDQFPKKKVVVLGTGWAGTSFVKSMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNISRKSGLDVQFSEAECYKIDPKNNKVYCRATHDKKFGGTEEFSLDYDYLVIAMGARSNTFNTPGVEEHAYFLKEVEDAKRIRHKVINLFERASLPSVPVEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLSKLYPSLKDHVKITLLEAGDHILNMFDKRITEFAEGKFKRDGIDVKLGSMVVKVGEKEISSKERGSGEVVTLPHGMVVWSTGIGARPEVVDFMKQLGQINRRALVTDEWLRVEGCDNVYALGDCATINQRKVMEDIAVIFSKADEDNSGMLDLKEFQNVVGDIVERYPQVDIYLKSQMKDMASLLSKSQESPTTVVDIEYFKQALSKVDSQMKNLPATAQVAAQQGAYLADCFNRMELCERYPEGPLRFRGTGRHRFHAFRYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVISDWGRRFIFGRDSSQI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00187 575 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Vifa6g00187 575 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Vifa6g00187 575 SUPERFAMILY FAD/NAD(P)-binding domain 214 374 IPR036188 -
Vifa6g00187 575 SUPERFAMILY EF-hand 371 461 IPR011992 -
Vifa6g00187 575 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Vifa6g00187 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Vifa6g00187 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 57 76 - -
Vifa6g00187 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Vifa6g00187 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 349 371 - -
Vifa6g00187 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 379 IPR023753 GO:0016491
Vifa6g00187 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 406 - -
Vifa6g00187 575 PANTHER NADH DEHYDROGENASE 50 575 IPR045024 GO:0003954|GO:0006116
Vifa6g00187 575 Gene3D - 440 574 - -
Vifa6g00187 575 Gene3D - 48 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00187 Vifa-Chr6 79958457 79961158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00187 5 575 Chloroplast and Mitochondria Gene Families AT4G21490 68.685 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00187 K03885 - gmx:100820044 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00187 6 79958457 79961158 Vifa6g00187 6 79958457 79961158 ECH