Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00186 ATGAAGGCTCTCCATTCTCGTTCAAGTAAGGATTGCATGCCAACCGATGATGAACTTCTTCAAAAATTCCTCTACAACAAAATTAACAATAAACCAATTCCCAATTATCTCAATATTCTCGAACATGATTTGTTCGGTACTAACAAGAATCCCTTGGATATATGGAACGAGTTTGAAGCTTCGTACTCATATGACAGAAAAGACTTATATTTCTTTACCACCTTAAAGAAAAAATCTGTTACGAGCACACGCTCCATTCGCACTATTGGCAATGAAGCAATAATTCAATCAAATGATGGTGAAAACAAGAAGAATTACGAGGATAACATAGAGTTTGCATATAATGGAGAAAAAATAAAATGTATAAGAAGTACATGGCCAGAAGAGTGCAGATATAGAAATAAAGATGGAAGTGATATCATCATGAATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTGATGATGATGATGATGATGATGATGATGATGATGATGGTGATGAGATGTCTTGGCCAGAACTTTTTGCAAAGGAACTGTTGGAAATTAATGGAGGAGGAGGGTTCATAAAAGAAGACGATGTTCAAATGCTTAACAATAGTTCTCATAAGGATTTTTTTATTGGGAAATAA 660 0.3424 MKALHSRSSKDCMPTDDELLQKFLYNKINNKPIPNYLNILEHDLFGTNKNPLDIWNEFEASYSYDRKDLYFFTTLKKKSVTSTRSIRTIGNEAIIQSNDGENKKNYEDNIEFAYNGEKIKCIRSTWPEECRYRNKDGSDIIMNKEEEEEEEEEEEEEEEEEDGDDDDDDDDDDDDGDEMSWPELFAKELLEINGGGGFIKEDDVQMLNNSSHKDFFIGK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00186 219 Pfam No apical meristem (NAM) protein 13 89 IPR003441 GO:0003677|GO:0006355
Vifa6g00186 219 MobiDBLite consensus disorder prediction 143 179 - -
Vifa6g00186 219 Coils Coil 138 166 - -
Vifa6g00186 219 MobiDBLite consensus disorder prediction 137 184 - -
Vifa6g00186 219 Gene3D NAC domain 15 167 IPR036093 GO:0003677|GO:0006355
Vifa6g00186 219 SUPERFAMILY NAC domain 13 126 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00186 Vifa-Chr6 78829772 78831065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00186 14 126 NAC Transcription Factor Family AT3G15510 28.099 1.37e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g00186 NAM 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00186 - - psat:127093642 167.162