Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00185 ATGAAGGCTCTTCATTCTCGTTCAAGTAAGGATTACATGCCAACCGATGATGAACTTCTTCAAAAATTCCTCTACAACAAAATTAACAATAAACCAATTCCCAATTATCTCAATATTCTCGAACATGATTTGTTCGGTACTAACAAGAATCCCTTGGATATATGGAACAAGTTTGAAGCTTCGTACTCATATGACAGAAAAGACCTATATTTCTTTACCACCTTACAGAAAAAATCCGTTATGAGCACACGCTCCGTTCGCACTATTGGCAATGGTAATTGGGAAGGTGAAGACACTAGAAAAAATATATTTGCCAAAGAAACGAACCAACTTCTCGGTCTGAAAAAACGTTTTTGTTTCGAGAAGAGTAACACTCCTCAAGATAGTGGATGGATCTTGCACGAATATAACCTCCACAAATCTTTGATTAACAATACTCTGGCCAATAATTATGTACTATGCAGACTTAGAAAGAATTTGAAACCGGAATCACAAAATACACAAGCAAAAGCAAGTATAACTGAACAATCTAATTCTCATTTAAGAAAAACTTCAAGAACAAAAAATTATTTTGAGCAAGAGAGTAATGAAAAGACTGCTAAAGAAAGAGAAGTTATCATTCCTAAACAAGCAGAACCAGTCATATCTAAAAAAGACAAATGTATAAGAAGTACATGGCCAGAAGAGTGCAGATATAACAATAAAGATGGAAGTGATATCATCATGAATAAAGAAGAAGAAGAAGAAGAAGATGGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGATGTCTTGGCCAGAACTTTTTGCAAAGGAACTGTTGGAAATTAATGGAGGAGGAGGGTTCATAAAAGAAGACGATGTTCAAATGCTTAACAATAGTTCTCATAAGGATTTTTTTATTGGGAAATAA 999 0.3413 MKALHSRSSKDYMPTDDELLQKFLYNKINNKPIPNYLNILEHDLFGTNKNPLDIWNKFEASYSYDRKDLYFFTTLQKKSVMSTRSVRTIGNGNWEGEDTRKNIFAKETNQLLGLKKRFCFEKSNTPQDSGWILHEYNLHKSLINNTLANNYVLCRLRKNLKPESQNTQAKASITEQSNSHLRKTSRTKNYFEQESNEKTAKEREVIIPKQAEPVISKKDKCIRSTWPEECRYNNKDGSDIIMNKEEEEEEDGDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEMSWPELFAKELLEINGGGGFIKEDDVQMLNNSSHKDFFIGK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00185 332 MobiDBLite consensus disorder prediction 163 180 - -
Vifa6g00185 332 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Vifa6g00185 332 MobiDBLite consensus disorder prediction 163 207 - -
Vifa6g00185 332 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Vifa6g00185 332 PANTHER NAC TRANSCRIPTION FACTOR 56 12 209 - -
Vifa6g00185 332 MobiDBLite consensus disorder prediction 243 294 - -
Vifa6g00185 332 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vifa6g00185 332 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Vifa6g00185 332 MobiDBLite consensus disorder prediction 232 297 - -
Vifa6g00185 332 MobiDBLite consensus disorder prediction 181 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00185 Vifa-Chr6 78654986 78656322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00185 12 156 NAC Transcription Factor Family AT5G13180 33.784 3.06e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g00185 NAM 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00185 - - psat:127093644 385.571