Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00184 ATGAAGGCTCTCCATTCTCGTTCAAGTAAGGATTGCATGCCAACCGATGATGAACTTCTTCAAAAATTCCTCTACAACAAAATTAACAATAAACCAATTCCCAATCATCTCAATATTCTCGAACATGATTTGTTCGGTACTAACAAGAATCCCTTGGATATATGGAACGAGTTTGAAGCTTCGTACTCATATGACGGAAAAGACCTATATTTTTTTACCACCTTAAGGAAAAAATCTGTTACGAGCACACGCTCCGTTCGCACTATTGGCAATGGTAATTGGGAAGGTGAAGACACCGGAAAAAATATATTTGCCAAAGAAACGAACCAACTTCTCGGTCTGAAAAAACGTTTTCGTTTCGAGAAGAGTAACACTCCTCAAGATGGTGGATGGATCTTGCACGAATATAACCTCCATAAATCTTTGATTAACAATACTCTGGCCAATAATTATGTACTATGCAGACTTAGAAAGAATTTGAAACCGGAATCACAAAATACACAAGCAAAAGCAAGTATAACTGATCAATCTAATTCTCATTTAAGAAAAACTTCAAGAACAAAAAATTATTTTGAGCAAGAGAGTAATGAAAAGACTGCTAAAGAAAGAGAAGTTATCATTCCTAAACAAGCAGAACCAGTCATATCTGGCAATAATGTTTTGGTGAAAAAATATATTATTTATGAAGAAGCAATAATTCAATCAAATGATGGTGGAAACAAGAAGAATTACGAGGATGACATAGAGATTGCATATAATGGAGAAAAAAGAAAATGTATAAGAAGTACATGGCCAGAAGAGTGCAGATATAACAATAAAGATGGAAGTGATATCATCATGAATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTGATGATGATGATGATGATGATGATGATGATGATGATAATGGTGATGAGATGTCTTGGCCAGAACTTTTTGCAAAGGAACTGTTGGAAATTAATGGAGGAGGAGGGTTCATAAAAGAAGACGATGTTCAAATGCTTAACAATAGTTCTCATAAGGATTTTTTTATTGGGAAATAA 1089 0.3425 MKALHSRSSKDCMPTDDELLQKFLYNKINNKPIPNHLNILEHDLFGTNKNPLDIWNEFEASYSYDGKDLYFFTTLRKKSVTSTRSVRTIGNGNWEGEDTGKNIFAKETNQLLGLKKRFRFEKSNTPQDGGWILHEYNLHKSLINNTLANNYVLCRLRKNLKPESQNTQAKASITDQSNSHLRKTSRTKNYFEQESNEKTAKEREVIIPKQAEPVISGNNVLVKKYIIYEEAIIQSNDGGNKKNYEDDIEIAYNGEKRKCIRSTWPEECRYNNKDGSDIIMNKEEEEEEEEEEEEEEEEEEEEEDGDDDDDDDDDDDDNGDEMSWPELFAKELLEINGGGGFIKEDDVQMLNNSSHKDFFIGK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00184 362 MobiDBLite consensus disorder prediction 164 200 - -
Vifa6g00184 362 MobiDBLite consensus disorder prediction 270 327 - -
Vifa6g00184 362 SUPERFAMILY NAC domain 13 158 IPR036093 GO:0003677|GO:0006355
Vifa6g00184 362 MobiDBLite consensus disorder prediction 164 180 - -
Vifa6g00184 362 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Vifa6g00184 362 PANTHER NAC TRANSCRIPTION FACTOR 56 13 202 - -
Vifa6g00184 362 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Vifa6g00184 362 MobiDBLite consensus disorder prediction 181 200 - -
Vifa6g00184 362 Coils Coil 276 308 - -
Vifa6g00184 362 MobiDBLite consensus disorder prediction 281 322 - -
Vifa6g00184 362 Pfam No apical meristem (NAM) protein 13 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00184 Vifa-Chr6 78643548 78644856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00184 14 156 NAC Transcription Factor Family AT5G13180 33.562 6.23e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g00184 NAM 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00184 - - psat:127093644 482.641