Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00183 ATGAAGGCTCTCCATTCTCGTTCAAGTAAGGATTGCATGCCAACCGATGATGAACTTCTTCAAAAATTCCTCTACAACAAAATTAACAATAAACCAATTCCCAATTATCTCAATATTCTCGAACATGATTTGTTCGGTACTAACAAGAATCCCTTGGATATATGGAACGAGTTTGAAGCTTCGTACTCATATGACGGAAAAGACCTATATTTCTTTACCACCTTAAGGAAAAAATCTGTTACGAGCACACGCTCCGTTCGCACTATTGGCAATGGTAATTGGGAAGGTGAAGACACCGGAAAAAATATATTTGCCAAAGAAACGAACCAACTTCTCGGTCTGAAAAAACGTTTTCGTTTCGAGAAGAGTAACACTCCTCAAGATGGTGGATGGATCTTGCACGAATATAACCTCCATAAATCTTTGATTAACAATACTCTGGCCAATAATTATGTACTATGCAGACTTAGAAAGAATTTGAAACCGGAATCACAAAATACACAAGCAAAAGCAAGTATAACTGATCAATCTAATTCTCATTTAAGAAAAACTTCAAGAACAAAAAATTATTTTGAGCAAGAGAGTAATGAAAAGACTGCTAAAGAAAGAGAAGTTATCATTCCTAAACAAGCAGAACCAGTCATATCTGGCAATAATGTTTTGGTGAAAAAATATATTATTTATGAAGAAGCAATAATTCAATCAAATGATGGTGGAAACAAGAAGAATTACGAGGATGACATAGAGATTGCATATAATGGAGAAAAAAGAAAATGTATAAGAAGTACATGGCCAGAAGAGTGCAGATATAACAATAAAGATGGAAGTGATATCATCATGAATAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGATGTCTTGGCCAGAACTTTTTGCAAAGGAACTGTTGGAAATTAATGGAGGAGGAGGGTTCATAAAAGAAGACGATGTTCAAATGCTTAACAATAGTTCTCATAAGGATTTTTTTATTGGGAAATAA 1113 0.3414 MKALHSRSSKDCMPTDDELLQKFLYNKINNKPIPNYLNILEHDLFGTNKNPLDIWNEFEASYSYDGKDLYFFTTLRKKSVTSTRSVRTIGNGNWEGEDTGKNIFAKETNQLLGLKKRFRFEKSNTPQDGGWILHEYNLHKSLINNTLANNYVLCRLRKNLKPESQNTQAKASITDQSNSHLRKTSRTKNYFEQESNEKTAKEREVIIPKQAEPVISGNNVLVKKYIIYEEAIIQSNDGGNKKNYEDDIEIAYNGEKRKCIRSTWPEECRYNNKDGSDIIMNKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDEMSWPELFAKELLEINGGGGFIKEDDVQMLNNSSHKDFFIGK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00183 370 SUPERFAMILY NAC domain 13 158 IPR036093 GO:0003677|GO:0006355
Vifa6g00183 370 MobiDBLite consensus disorder prediction 164 201 - -
Vifa6g00183 370 MobiDBLite consensus disorder prediction 164 180 - -
Vifa6g00183 370 MobiDBLite consensus disorder prediction 270 337 - -
Vifa6g00183 370 Pfam No apical meristem (NAM) protein 13 138 IPR003441 GO:0003677|GO:0006355
Vifa6g00183 370 Coils Coil 276 320 - -
Vifa6g00183 370 MobiDBLite consensus disorder prediction 181 201 - -
Vifa6g00183 370 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Vifa6g00183 370 PANTHER NAC TRANSCRIPTION FACTOR 56 13 219 - -
Vifa6g00183 370 SUPERFAMILY ARM repeat 281 340 IPR016024 -
Vifa6g00183 370 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Vifa6g00183 370 MobiDBLite consensus disorder prediction 281 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00183 Vifa-Chr6 78632161 78633494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00183 14 156 NAC Transcription Factor Family AT5G13180 33.562 1.02e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g00183 NAM 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00183 - - psat:127093644 475.707