Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00171 ATGTCTGCAATGAATATTTTCATCCTCTTGTTTGTAAGCCTCGTTTCTTATCCAGTTACTGATAAGGTAACTAGCTTACCGGAGCAACCACCGGTGCAGTTCAAGCAACACTCGGGATACATAACCGTTAATGTTTCCCACCACCGGAACCTCTTCTACTATTTCGTAGAAGCTGAAGTTGATCCACCGTCAAAACCAGTTGTACTATGGTTACATGGTGGGCCTGGTTGTTCTGCCGTGGGAGAAGCGGCATTTTCACAGCATGGACCTTTCCTCGTCACTTCCAAGGGTCTGATAAAAAATCCCAACAGCTGGAATAGAGAGGCAAATATGCTGTACTTGGATTCTCCAGCTGGCGTCGGTTTCTCTTATTCGGAAAACATGTCCGACTACTTATTTTTAAATGATGCCTTTGCAGCAAGGGATCACCTTGCTTTTTTGCAGCTTTGGTTCAGTAAATTCTCCGATTTCCGAACCAACGATTTTTTTATAGCTGGGGAGAGTTATGCAGGACACTTTGCTCCCCAACTTGCACACCTCATCCTTCAGACCAAATCTGAATTCAATCTGAAGGGGATAGCTATAGGGAATCCTCTTCTTGAATTTGACACCGACTTCAATGCCTCGACTGATTTTTTGTGGCAGCATGGAGTAATTTCAGAGTCAACATATGAAATGTTGAACAATGAATGCAGCTACCCAACAATAAAGAAGCAGATCAGAGCTACTGGTGAATTAAGTACCAGCTGTGCTAAAGTTAACCTTCAAATGGAAACGGAGATCAATGCCAATACAGACACATTCGACATTTTGGCTGATGTTTGTCCCGTGCCACCAGAAACACGAGCTGGAGTGAAGACAAATGTATGCATACGAGATGACTCGATTGCATACTTGAATAGGAAAGATGTGAGAAAAGCTCTTCACGCCAAGCTTGTAGGGGTCAAAGCTTGGTCATCCTGCAGTCCGGTTCTTGTATATGACTTTCAAAATCTTGAAAATCCAACCATATCTTTGCTAGGGACACTTGTAAAGTCCGGTGTTAGGGTGCTAGCATATAGTGGTGATCAGGATTCGGTCATACCGTTTATTGGGACACGGTCTTTAATAAATGGATTGGCTAAAGATTTGGGGTTGAAGGTAACAAGACACCACCAAGTTTGGTTTCATGGAACTCAGGTTGCTGGATGGACCCAAGTATATGGGGACATCCTCACTTTTGCAACCGTAAGGGGAGCGGGTCATTCAACTCCATTAGCTCAACCAGAGAGATCGTTGGAGATGATGAAAGCTTTTTGGAAAGGAAAACCCCTCCCTAAAAGACCACCCTTTCCCATCAAAGATTGA 1347 0.4373 MSAMNIFILLFVSLVSYPVTDKVTSLPEQPPVQFKQHSGYITVNVSHHRNLFYYFVEAEVDPPSKPVVLWLHGGPGCSAVGEAAFSQHGPFLVTSKGLIKNPNSWNREANMLYLDSPAGVGFSYSENMSDYLFLNDAFAARDHLAFLQLWFSKFSDFRTNDFFIAGESYAGHFAPQLAHLILQTKSEFNLKGIAIGNPLLEFDTDFNASTDFLWQHGVISESTYEMLNNECSYPTIKKQIRATGELSTSCAKVNLQMETEINANTDTFDILADVCPVPPETRAGVKTNVCIRDDSIAYLNRKDVRKALHAKLVGVKAWSSCSPVLVYDFQNLENPTISLLGTLVKSGVRVLAYSGDQDSVIPFIGTRSLINGLAKDLGLKVTRHHQVWFHGTQVAGWTQVYGDILTFATVRGAGHSTPLAQPERSLEMMKAFWKGKPLPKRPPFPIKD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00171 448 FunFam Carboxypeptidase 16 439 - -
Vifa6g00171 448 Gene3D alpha/beta hydrolase 16 439 IPR029058 -
Vifa6g00171 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 101 113 IPR001563 GO:0004185|GO:0006508
Vifa6g00171 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 175 IPR001563 GO:0004185|GO:0006508
Vifa6g00171 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 405 418 IPR001563 GO:0004185|GO:0006508
Vifa6g00171 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 124 IPR001563 GO:0004185|GO:0006508
Vifa6g00171 448 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 422 IPR001563 GO:0004185|GO:0006508
Vifa6g00171 448 Pfam Serine carboxypeptidase 29 434 IPR001563 GO:0004185|GO:0006508
Vifa6g00171 448 SUPERFAMILY alpha/beta-Hydrolases 23 439 IPR029058 -
Vifa6g00171 448 ProSitePatterns Serine carboxypeptidases, serine active site. 164 171 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00171 Vifa-Chr6 72427509 72431266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00171 298 438 Calmodulin-binding Proteins AT2G22960 29.078 4.39e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00171 K16297 - gmx:100805028 560.451