Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00170 ATGTCTGCAATGAATATTTTCATCCTCTTGTTTGTAAGCCTCGTTTCTTATCCTGCCCTACCAGTTACTGATAAGGTAACTAGCTTACCCGAGCAACCACCGGTGCAGTTCAAGCAACACTCGGGATACATAACCGTTAATGTTTCCCACCACCGGAACCTCTTCTACTATTTCGTAGAAGCTGAAGTTGATCCACCGTCAAATCCAGTTGTACTATGGTTACATGGTGGGCCTGGTTGTTCTGCCGTGGGAGAAGCGGCATTTTCACAGCATGGACCTTTCCTCGTCACTTCCAAGGGTCTGATAAAAAATCCCAACAGCTGGAATACAGAGGCAAATATGCTGTACTTGGATTCTCCAGCTGGCGTCGGTTTCTCTTATTCGGAAAACATGTCCGACTACTTATTTTTAAATGATGCCTTTGCAGATTCTAAAACTAAAATTTGCTTGAAAGATGTGCATACAAATTTCTCACTACTGTTTCTGTTGTTGTTATTAGAAATGGTGGGCAAGGGATCACCTTACTCCGATTTCCGAACCAACGATTTTTTTATAGCTGGGGAGGGTTATGCAGGACACTTTGCTCCCCAACTTGCACACCTCATCCTTCAGACCAAATCTGAATTCAATCCGAAGGGGATAGCTATAGGGAATCCTCTTCTTGAATTTGACACCGACTTCAAAGCCTCGACTGATTTTTTGTGGCAGAATGGAGTAATTTCAGAGTCAACATATGAAATGTTGAACAATGAATGCAGCTACCCAACAATGCAGAAGCAGATGAGAGCTACTGGTGATTTAAGTACCAGCTGTGCTAAAGTTAACCTTCAAATGGAAACCGAGATCGATGGCGATACAGACGCATTCAACATTTTGGCTGATGTTTGTCCCGTGCCACCAGAAACACGAGCCGGAGTGAAGACAAATGTATGCATACGAGATGACTCGATTGCGTACTTGAATAGGAAAGATGTGAGAAAAGCTCTTCACGCCAAGCTTATAGGGGTCAAAGCTTGGTCATCCTGCAGTCCGGTTCTTGTGTATGACTTTCAAAATCTTGAAAATTCAACCATATCTTTGCTAGGGACACTTGTAAAGTCCGGTGTTAGGGTGCTAGCATATAGTGGTGATCAGGATTCTGTCATACCGTTTATTGGGACACGGTCTTTAATAAATGGATTGGCTAAAGATTTGGTCTTGAAGGTAACAAGACACCACCAAGCTTGGTTTCATGGAACTCAGGTTGCTGGATGGACCCAAGTATATGGGGACATCCTCACTTTTGCAACCGTAAGGGGAGCGGGTCATTCAACTCCATTAGCTCAACCAGAGAGATCGTCGGAGATGATGAAAGCTTTTTGGAAAGGAAAACCCCCCTCCTTAAAAGACCACCCTTTCCCATCAAAGATTGAAAAAAATAATGTTTTTTTTTATTTACTTGTAAACTTGTGTCTTATCCTAAGTGGGCTTTATGGTCCATAA 1482 0.4285 MSAMNIFILLFVSLVSYPALPVTDKVTSLPEQPPVQFKQHSGYITVNVSHHRNLFYYFVEAEVDPPSNPVVLWLHGGPGCSAVGEAAFSQHGPFLVTSKGLIKNPNSWNTEANMLYLDSPAGVGFSYSENMSDYLFLNDAFADSKTKICLKDVHTNFSLLFLLLLLEMVGKGSPYSDFRTNDFFIAGEGYAGHFAPQLAHLILQTKSEFNPKGIAIGNPLLEFDTDFKASTDFLWQNGVISESTYEMLNNECSYPTMQKQMRATGDLSTSCAKVNLQMETEIDGDTDAFNILADVCPVPPETRAGVKTNVCIRDDSIAYLNRKDVRKALHAKLIGVKAWSSCSPVLVYDFQNLENSTISLLGTLVKSGVRVLAYSGDQDSVIPFIGTRSLINGLAKDLVLKVTRHHQAWFHGTQVAGWTQVYGDILTFATVRGAGHSTPLAQPERSSEMMKAFWKGKPPSLKDHPFPSKIEKNNVFFYLLVNLCLILSGLYGP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Vifa6g00170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Vifa6g00170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Vifa6g00170 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Vifa6g00170 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 443 IPR001563 GO:0004185|GO:0006508
Vifa6g00170 493 SUPERFAMILY alpha/beta-Hydrolases 26 458 IPR029058 -
Vifa6g00170 493 Pfam Serine carboxypeptidase 32 455 IPR001563 GO:0004185|GO:0006508
Vifa6g00170 493 Gene3D alpha/beta hydrolase 19 459 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00170 Vifa-Chr6 72423252 72427177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00170 319 458 Calmodulin-binding Proteins AT2G22960 28.571 8.68e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00170 K16297 - gmx:100805028 498.434