Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00165 ATGACGATTGGTTCCTTCTTCATCACAGCCTCCAGAGCTCTCACCACTCATCCTTTCTCCTCCAGTTTTCTTCTTCTCTGTACTATTAGCGGTGGAGGTGTGGTGGCACTCTCAGAATCACAATCAGAAGCTGAACGTCCTAATATTGAAAATCATGAACCCCGCAAAAAGAAAGTTGTTGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTTAAGGGTTTGGATGCATCATTATATGATGTTCAGGTTGTTTCGCCTCGCAACTACTTTGCATTTACTCCCTTATTGCCAAGTGTCACTTGTGGGACAGTTGAAGCTCGGAGCATCGTGGAACCTGTCCGAAACATCATTAAAAAGAGAAAAGGAGAAATAAAATTTTGGGAGGCAGAATGCGTCAAGATTGATGCTGCAGGCAAAAAGGTTTTTTGTCTGTCTAATATTGAAAACTTAGTGGGAAGTGGTGAATTTTCTCTAGACTATGACTTCTTGGTTGTATCGGTAGGAGCACAAGTAAATACTTTCAATACCCCGGGTGTCAAGGAGAATTGTCATTTTCTGAAGGATGTAGAGGACGCTCAGAAGATCAGACTGTCTGTAATAGATTGTCTTGAGAAGGCTGTTCTTCCCAGTCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGTGGTCCAACTGGTGTTGAATTTGCTGCAGAGCTTCATGATTTTATCCAAGAAGATTTGACCAAATTATATCCAACCGTTAAAGATAAAGTGAAGATAACGTTAATTCAATCCGGAGATCACATTTTGAACATGTTTGATGAAAGAATTAGTTCATTTGCTGAGCAGAAGTTTACGAGAGACGGTATAGAAGTTCAAACTGGATGCCGGGTTTTGAGTGTTAATGACAAGGAAATTACAATGAAGGTGAAATCAACAGGAGAGGTTTGCTCTGTGCCTCATGGATTGATTGTCTGGTCCACCGGCATTTCTACTCTTCCAGTTATAAAGAACTTCATGGAAGAAATTGGTCAGACTAAAAGGCACGTACTAGCAACTGACGAATGGTTGAGAGTAAACGGATGTGAAGATGTGTTCGCCATTGGTGATTGCTCATCGATAAAGCAACGTAAAATCATGGATGACGTCTTGGACATATTTAAGGCGGCAGACAAAAATAACTCGGGTACCTTAACTGTAGAAGAATTCAAAGAAGTGATGGATGACATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAAACATATACTTGATTTGAGGGTTCTGTGGAACGACGCAGATGGAAATGAAAGAAAAGAAATAGACATAGAAGGGTTTAAGCTTGCCCTTTCTGTGGCAGATTCACAAGTGAAGACTCTTCCAGCAACTGCACAGGTTGCTGCGCAACAAGGTGCATATCTAGCTAGTTGCTTTAACCGCAATGATGAATTAAAAGAGCATCCAGAAGGACCTCGACGGTTTACAGAATCTGGACATCATCGGTTTCTTCCCTTCCGGTATAAGCATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAAGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATTGGTCACAGCACTCAATGGCTATGGTATTCGGTATATGCAAGCAAGCAAGTGAGCTGGCGCACACGGTATTTGGTCGTGTCGGATTGGACTAGAAGATTCGTATTTGGGAGGGATTCAAGTCGAGTTTAA 1734 0.421 MTIGSFFITASRALTTHPFSSSFLLLCTISGGGVVALSESQSEAERPNIENHEPRKKKVVVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECVKIDAAGKKVFCLSNIENLVGSGEFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDFIQEDLTKLYPTVKDKVKITLIQSGDHILNMFDERISSFAEQKFTRDGIEVQTGCRVLSVNDKEITMKVKSTGEVCSVPHGLIVWSTGISTLPVIKNFMEEIGQTKRHVLATDEWLRVNGCEDVFAIGDCSSIKQRKIMDDVLDIFKAADKNNSGTLTVEEFKEVMDDIILRYPQVEYYLQKKHILDLRVLWNDADGNERKEIDIEGFKLALSVADSQVKTLPATAQVAAQQGAYLASCFNRNDELKEHPEGPRRFTESGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRRFVFGRDSSRV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00165 577 Gene3D - 438 577 - -
Vifa6g00165 577 Gene3D - 47 406 - -
Vifa6g00165 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Vifa6g00165 577 SUPERFAMILY EF-hand 371 458 IPR011992 -
Vifa6g00165 577 PANTHER NADH DEHYDROGENASE 51 577 IPR045024 GO:0003954|GO:0006116
Vifa6g00165 577 SMART efh_1 382 410 IPR002048 GO:0005509
Vifa6g00165 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 379 IPR023753 GO:0016491
Vifa6g00165 577 Pfam EF hand 383 408 IPR002048 GO:0005509
Vifa6g00165 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 375 IPR036188 -
Vifa6g00165 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 407 - -
Vifa6g00165 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Vifa6g00165 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00165 Vifa-Chr6 71583571 71586913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00165 5 577 Chloroplast and Mitochondria Gene Families AT4G21490 62.457 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00165 K03885 - gmx:100793566 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00165 6 71583571 71586913 Vifa6g00165 6 71583571 71586913 ECH