Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00157 ATGGATTGGAAAAGAACTATTTTGAAGAAGAACTATGGACATGTTTTATTGGGATTTTTGTTGATCTGTATTGCTCAGATTTCAAATGCTCTCACTGATCCCACTGATGTTGCTGCACTTAATAGCTTACATACTTCACTGGGATCTCCTCTTCTACCTGGATGGGTTTCAAGTGGTGGAGATCCGTGCGGAGAAGGGTGGCAAGGCATTCAATGCAATGGTTCGTTCATACAAAAAATTGTTCTGAATGGTGCAAATTTGGGAGGAGAACTAGGTGATAGTCTGGCAACATTTGTTACAATCTCAGTAATCGATCTGAGTAACAACAATATAGGAGGAAGTATTCCATCCAGTTTACCAGTTACCATGAGAAACTTTTTTCTTTCAGACAACCTGTTTACCGGAAGTATTCCAACCTCTTTAGCCACTTTAAGCGGAATGACAGACATGTCTCTTAACAACAATCATTTAACTGGAGAAATACCAGATGCGTTTCAGTCATTTACGCAATTGATCAATCTAGATTTATCTAGTAATAATCTGAGTGGGGAACTGCCTCCTTCGGTGGAGAACTTGTCATCTTTGACCACCCTACGCTTGCAGGATAATCAACTATCTGGGACACTTGATGTTTTACAAGACCTTCCTCTGAAAGATTTGAATGTCGAGAACAACCAATTTGTTGGCCCAATACCTCCAAAGCTGCTAAGCATCCCTAACTTCAGACAAGCTGGAAATCCATTTAATGATAATACCACGGTAACTCGTGCTCCTCCAGCTCGCTCCCCAGTCACAGCACCGCCAGGAGCACCATTTTTTGTTGTACCATCTGGTCCTGGTCGTGTACCTCCTAAACCGGCTGATGGACCAACTGCAGCGGTTGAGTCAAATTCTGGGAAATCGAACAAACATACCAAAAGGGTAGTTTTAATATCTATTGGCAGTGTTTTGGCATTCATTATTTTGGTACTAGCACTAGTTCTATTTATTCCAAGATGTGGTAGAAGGGAACGGGTTGACCGAAGGTCCAAACGACATCAAATTGGTGCTTATGGAGGTGAAAGGCAACAAAATCCTAGGGATTTAGGGGCTATAGTCCTGCCACCTAATCAAACAGACAAAGTACCGACCCAAGATGTCTTGAGGCCAAGTAACGACCGCCAAGAAGAGCCCAGGAGAGCGTGGGCGGTTCCGATCCCAAATGCACAGGATAAGAAAGAAAAGGATGTGCCAAGAATGGCGGCAATACCAAAGCCGGGAGATCATGAGATTGATATCATCAGTACACCAGAAGTGTATTTTGTGCCTCCGCCGCCACCCCCTCCTCCTCCACCGCCGCCGCCCCCACCTCCTCCCCCTCCTAGTATGAGGATGATTGTTGAGCCAGCCATTCCCCACAGAGGGACTAATGTCAATCCATCCTTAAGAAGTTCAATTTTTCCTCCTACTTTTGCAAAATCTTTCACCATTGCATCTCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGTTGGGCACTGTGTACAGGGCCGAGCTTCCTGATGGGAAGTTGTTTGCTGTAAAGAAACTAGACAAAAGAACCTCTGTTCACCAGAAGGATGATGAGTTTCTTGAATTAATAAATAATATCGACAGAATAAGACATACAAATATTGTTGAGCTTATTGGATACTGTTCAGAGCATGGACAAAGGCTTCTGATCTATGAGTACTGCAGTAAAGGGTCATTATATGATGCACTCCACTCAGATGATGAATTCAAAGCAACACTATCGTGGAATACTCGCATTCGGATGGCACTTGGTGCAGCTAGAGCCTTAGAATATTTGCATGAACAATGTCAGCCCCCTGTGGTACACAGAAATTTGAAGTCTGCCAATGTTCTCCTTGATGATGATCTGTCTGTGCGTGTATCTGATTGTGGTTTAGCTCCATTAATAGCTTCGGGATCTGTAACTCAGCTCTCGGGGAACCTGCAATCAGCTTACGGTTATGGAGCTCCAGAATTTGAGTCAGGAACTTACACTTACCAAAGTGACGTTTACAGTGTTGGAGTGGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCCATGACAGCTCACTTCCACGAGGGGAGCAGTTTCTTGCTAGATGGGCAATTCCCAAACTCCACGATATTGATGCATTATCAAAAATGGTTGACCCTTCTTTAAATGGAGTTTACCCTGCAAAGTCATTGTCAAATTTTGCAGACATTATTTCTCGATGCCTTCAGCCGGAGCCTGAATTTAGGCCAGCAATGTCAGAAGTTGTCTTATACTTACTAAATATGATCAAGAGGGAGTCTCAGAAAAGTGATTCAAATGAAAAATGA 2373 0.4315 MDWKRTILKKNYGHVLLGFLLICIAQISNALTDPTDVAALNSLHTSLGSPLLPGWVSSGGDPCGEGWQGIQCNGSFIQKIVLNGANLGGELGDSLATFVTISVIDLSNNNIGGSIPSSLPVTMRNFFLSDNLFTGSIPTSLATLSGMTDMSLNNNHLTGEIPDAFQSFTQLINLDLSSNNLSGELPPSVENLSSLTTLRLQDNQLSGTLDVLQDLPLKDLNVENNQFVGPIPPKLLSIPNFRQAGNPFNDNTTVTRAPPARSPVTAPPGAPFFVVPSGPGRVPPKPADGPTAAVESNSGKSNKHTKRVVLISIGSVLAFIILVLALVLFIPRCGRRERVDRRSKRHQIGAYGGERQQNPRDLGAIVLPPNQTDKVPTQDVLRPSNDRQEEPRRAWAVPIPNAQDKKEKDVPRMAAIPKPGDHEIDIISTPEVYFVPPPPPPPPPPPPPPPPPPPSMRMIVEPAIPHRGTNVNPSLRSSIFPPTFAKSFTIASLQQYTNSFSQENLIGGGMLGTVYRAELPDGKLFAVKKLDKRTSVHQKDDEFLELINNIDRIRHTNIVELIGYCSEHGQRLLIYEYCSKGSLYDALHSDDEFKATLSWNTRIRMALGAARALEYLHEQCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVTQLSGNLQSAYGYGAPEFESGTYTYQSDVYSVGVVMLELLTGRQSHDSSLPRGEQFLARWAIPKLHDIDALSKMVDPSLNGVYPAKSLSNFADIISRCLQPEPEFRPAMSEVVLYLLNMIKRESQKSDSNEK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00157 790 Gene3D Phosphorylase Kinase; domain 1 469 577 - -
Vifa6g00157 790 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 33 260 - -
Vifa6g00157 790 Gene3D Ribonuclease Inhibitor 30 255 IPR032675 -
Vifa6g00157 790 SUPERFAMILY L domain-like 32 240 - -
Vifa6g00157 790 Gene3D Transferase(Phosphotransferase) domain 1 579 790 - -
Vifa6g00157 790 SUPERFAMILY Protein kinase-like (PK-like) 476 774 IPR011009 -
Vifa6g00157 790 MobiDBLite consensus disorder prediction 278 301 - -
Vifa6g00157 790 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 78 771 - -
Vifa6g00157 790 MobiDBLite consensus disorder prediction 432 457 - -
Vifa6g00157 790 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vifa6g00157 790 Pfam Protein tyrosine and serine/threonine kinase 503 772 IPR001245 GO:0004672|GO:0006468
Vifa6g00157 790 ProSiteProfiles Protein kinase domain profile. 500 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00157 790 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 578 788 - -
Vifa6g00157 790 MobiDBLite consensus disorder prediction 338 392 - -
Vifa6g00157 790 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 467 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00157 Vifa-Chr6 67943417 67949350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00157 22 785 Strubbelig Receptor Gene Family AT4G03390 59.207 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa6g00157 PK_Tyr_Ser-Thr 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00157 - - mtr:25492087 1298.11