Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00156 ATGGATTGGAAAAGAACTATTTTGAAGAAGAACTATGGACATGTTTTATTGGGATTTTTGTTGATCTGTATTGCTCAGATTTCAAATGCTCTCACTGATCCCACTGATGTTGCTGCACTTAATAGCTTACATACTTCACTGGGATCTCCTCTTCTACCTGGATGGGTTTCAAGTGGTGGAGATCCGTGCGGAGAAGGGTGGCAAGGCATTCAATGCAATGGTTCGTTCATACAAAAAATTGTTCTGAATGGTGCAAATTTGGGAGGAGAACTAGGTGATAGTCTGGCAACATTTGTTACAATCTCAGTAATCGATCTGAGTAACAACAATATAGGAGGAAGTATTCCATCCAGTTTACCAGTTACCATGAGAAACTTTTTTCTTTCAGACAACCTGTTTACCGGAAGTATTCCAACCTCTTTAGCCACTTTAAGCGGAATGACAGACATGTCTCTTAACAACAATCATTTAACTGGAGAAATACCAGATGCGTTTCAGTCATTTACGCAATTGATCAATCTAGATTTATCTAGTAATAATCTGAGTGGGGAACTGCCTCCTTCGGTGGAGAACTTGTCATCTTTGACCACCCTACGCTTGCAGGATAATCAACTATCTGGGACACTTGATGTTTTACAAGACCTTCCTCTGAAAGATTTCAGGAATGTCGAGAACAACCAATTTGTTGGCCCAATACCTCCAAAGCTGCTAAGCATCCCTAACTTCAGACAAGCTGGAAATCCATTTAATGATAATACCACGGTAACTCGTGCTCCTCCAGCTCGCTCCCCAGTCACAGCACCGCCAGGAGCACCATTTTTTGTTGTACCATCTGGTCCTGGTCGTGTACCTCCTAAACCGGCTGATGGACCAACTGCAGCGGTTGAGTCAAATTCTGGGAAATCGAACAAACATACCAAAAGGGTAGTTTTAATATCTATTGGCAGTGTTTTGGCATTCATTATTTTGGTACTAGCACTAGTTCTATTTATTCCAAGATGTGGTAGAAGGGAACGGGTTGACCGAAGGTCCAAACGACATCAAATTGGTGCTTATGGAGGTGAAAGGCAACAAAATCCTAGGGATTTAGGGGCTATAGTCCTGCCACCTAATCAAACAGACAAAGTACCGACCCAAGATGTCTTGAGGCCAAGTAACGACCGCCAAGAAGAGCCCAGGAGAGCGTGGGCGGTTCCGATCCCAAATGCACAGGATAAGAAAGAAAAGGATGTGCCAAGAATGGCGGCAATACCAAAGCCGGGAGATCATGAGATTGATATCATCAGTACACCAGAAGTGTATTTTGTGCCTCCGCCGCCACCCCCTCCTCCTCCACCGCCGCCGCCCCCACCTCCTCCCCCTCCTAGTATGAGGATGATTGTTGAGCCAGCCATTCCCCACAGAGGGACTAATGTCAATCCATCCTTAAGAAGTTCAATTTTTCCTCCTACTTTTGCAAAATCTTTCACCATTGCATCTCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGTTGGGCACTGTGTACAGGGCCGAGCTTCCTGATGGGAAGTTGTTTGCTGTAAAGAAACTAGACAAAAGAACCTCTGTTCACCAGAAGGATGATGAGTTTCTTGAATTAATAAATAATATCGACAGAATAAGACATACAAATATTGTTGAGCTTATTGGATACTGTTCAGAGCATGGACAAAGGCTTCTGATCTATGAGTACTGCAGTAAAGGGTCATTATATGATGCACTCCACTCAGATGATGAATTCAAAGCAACACTATCGTGGAATACTCGCATTCGGATGGCACTTGGTGCAGCTAGAGCCTTAGAATATTTGCATGAACAATGTCAGCCCCCTGTGGTACACAGAAATTTGAAGTCTGCCAATGTTCTCCTTGATGATGATCTGTCTGTGCGTGTATCTGATTGTGGTTTAGCTCCATTAATAGCTTCGGGATCTGTAACTCAGCTCTCGGGGAACCTGCAATCAGCTTACGGTTATGGAGCTCCAGAATTTGAGTCAGGAACTTACACTTACCAAAGTGACGTTTACAGTGTTGGAGTGGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCCATGACAGCTCACTTCCACGAGGGGAGCAGTTTCTTGCTAGATGGGCAATTCCCAAACTCCACGATATTGATGCATTATCAAAAATGGTTGACCCTTCTTTAAATGGAGTTTACCCTGCAAAGTCATTGTCAAATTTTGCAGACATTATTTCTCGATGCCTTCAGCCGGAGCCTGAATTTAGGCCAGCAATGTCAGAAGTTGTCTTATACTTACTAAATATGATCAAGAGGGAGTCTCAGAAAAGTGATTCAAATGAAAAATGA 2376 0.4318 MDWKRTILKKNYGHVLLGFLLICIAQISNALTDPTDVAALNSLHTSLGSPLLPGWVSSGGDPCGEGWQGIQCNGSFIQKIVLNGANLGGELGDSLATFVTISVIDLSNNNIGGSIPSSLPVTMRNFFLSDNLFTGSIPTSLATLSGMTDMSLNNNHLTGEIPDAFQSFTQLINLDLSSNNLSGELPPSVENLSSLTTLRLQDNQLSGTLDVLQDLPLKDFRNVENNQFVGPIPPKLLSIPNFRQAGNPFNDNTTVTRAPPARSPVTAPPGAPFFVVPSGPGRVPPKPADGPTAAVESNSGKSNKHTKRVVLISIGSVLAFIILVLALVLFIPRCGRRERVDRRSKRHQIGAYGGERQQNPRDLGAIVLPPNQTDKVPTQDVLRPSNDRQEEPRRAWAVPIPNAQDKKEKDVPRMAAIPKPGDHEIDIISTPEVYFVPPPPPPPPPPPPPPPPPPPSMRMIVEPAIPHRGTNVNPSLRSSIFPPTFAKSFTIASLQQYTNSFSQENLIGGGMLGTVYRAELPDGKLFAVKKLDKRTSVHQKDDEFLELINNIDRIRHTNIVELIGYCSEHGQRLLIYEYCSKGSLYDALHSDDEFKATLSWNTRIRMALGAARALEYLHEQCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVTQLSGNLQSAYGYGAPEFESGTYTYQSDVYSVGVVMLELLTGRQSHDSSLPRGEQFLARWAIPKLHDIDALSKMVDPSLNGVYPAKSLSNFADIISRCLQPEPEFRPAMSEVVLYLLNMIKRESQKSDSNEK 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00156 791 Gene3D Phosphorylase Kinase; domain 1 470 578 - -
Vifa6g00156 791 Pfam Protein tyrosine and serine/threonine kinase 504 773 IPR001245 GO:0004672|GO:0006468
Vifa6g00156 791 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 579 789 - -
Vifa6g00156 791 SUPERFAMILY L domain-like 77 250 - -
Vifa6g00156 791 ProSiteProfiles Protein kinase domain profile. 501 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00156 791 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 468 578 - -
Vifa6g00156 791 MobiDBLite consensus disorder prediction 339 393 - -
Vifa6g00156 791 Gene3D Ribonuclease Inhibitor 30 256 IPR032675 -
Vifa6g00156 791 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Vifa6g00156 791 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Vifa6g00156 791 SUPERFAMILY Protein kinase-like (PK-like) 477 775 IPR011009 -
Vifa6g00156 791 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 33 261 - -
Vifa6g00156 791 Gene3D Transferase(Phosphotransferase) domain 1 580 791 - -
Vifa6g00156 791 MobiDBLite consensus disorder prediction 433 459 - -
Vifa6g00156 791 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 77 772 - -
Vifa6g00156 791 MobiDBLite consensus disorder prediction 280 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00156 Vifa-Chr6 67943417 67949350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00156 22 786 Strubbelig Receptor Gene Family AT4G03390 59.004 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa6g00156 PK_Tyr_Ser-Thr 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00156 - - mtr:25492087 1291.95