Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00141 ATGAATAGCAGCGGTGGCAGTAATGGAGGCGGAGGAGGAGGAGGAATGATGGGTTTCAGTAAATCATCACCTTTTACAGTTTCTCAGTGGCAGGAACTTGAACATCAAGCTTTGATCTTCAAGTATATGGTTGCTGGTCTTCCTGTTCCACCTGATCTCGTTCTTCCCTTTCACTCTCACAACTTCTTTCACCATTCTATTCCTACCCTGAGTTATTGTTCCTTCTATGGTAAGAAGGTGGACCCGGAGCCTGGACGATGTAGGAGGACCGATGGAAAAAAATGGAGGTGCTCTAAGGAAGCATACCCTGACTCCAAATACTGTGAACGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACAACTCTTGTCGCTGCTCCCACCACTACACCTCCTAACTTCCACACGACAAATGCCTTTGCTACTCATCTCGATACCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGTCTTAAATCTGAGGGCGGAGAACATAGCTGCTTTGCAGAAGCTTCAGGAGGAGGCAACAAATGTGTCCAAATGGAGTCTCAGCTAGAAAACATATGGCCTTTGATGTCAACCAGAGTTTCCTCTTTTTCTGCATCAAAATCAAGTAATAATTCCATGGTGCAGAGTGATTATCCCCAGCATTCATTTTTATCAACTGAATATGGATCTGGAGAAGCTGTGAAGGAAGAGGGCCAGCCTCTTCGGTCCTTTTTCAATGAATGGCCTAAGAGCAGGGAGTCATGGTCTGGTTTGGAAGATGAAAGATCCAACCAAACAGCCTTCTCCACTACTCAACTCTCAATATCCATTCCCATGTCATCTTCTGACTTCTCTGCCACAAGCTCTTAG 888 0.4561 MNSSGGSNGGGGGGGMMGFSKSSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPFHSHNFFHHSIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTTLVAAPTTTPPNFHTTNAFATHLDTIPYGIPSKEYRYLQGLKSEGGEHSCFAEASGGGNKCVQMESQLENIWPLMSTRVSSFSASKSSNNSMVQSDYPQHSFLSTEYGSGEAVKEEGQPLRSFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSSDFSATSS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00141 295 ProSiteProfiles QLQ domain profile. 24 59 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa6g00141 295 SMART QLQ_2 23 59 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa6g00141 295 Pfam WRC 82 124 IPR014977 -
Vifa6g00141 295 Pfam QLQ 24 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa6g00141 295 PANTHER GROWTH-REGULATING FACTOR 5 16 289 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa6g00141 295 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00141 Vifa-Chr6 57805756 57808083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00141 16 124 GRF Transcription Factor Family AT3G13960 58.065 2.28e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa6g00141 WRC 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00141 - - gmx:100787226 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00141 6 57805756 57808083 Vifa6g00141 6 57805756 57808083 ECH