Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00134 ATGCAGCTCAAACTTAGCTCAAATCTGAGGCTATTCTGCTTAGGCCTGGCCTTGAAATTCGCCCTTCTGCCAACGGCGGTGGGGCAACTTCAGCACCACAGCCTAGACATGCATTGGTATCCTGGAACAGCCACCTGGTACGGTGACCCCAACGGAGACGGAAGTACCGGTGGAGCGTGTGGATATGGTACGTTGGTGGACGTGAAGCCGTTGAGGGCGAGAGTAGGGGCGGTTGGTTCAGTCCTGTTTATGAAAGGGGAAGGTTGCGGTGCGTGTTACAAAGTAAAGTGCTTAGACAATAGCATATGTTCTAGACGAGCAGTTACGGTCATAATCACCGACGAGTGCCCTGGCTGCCCCACTGACTCCACCCACTTTGACCTCAGTGGTGCTGCTTTTGGACACATGGCTATCTCCGGCGAGAATGGTCAGCTCAGAAACCGCGGTCAAATCCCTGTCATTTACCGAAGAACTCCATGTAAATATCCAGGGAGAAAAATTGCCTTCCATGTTAACGAAGGTTCCACACCTTTTTGGTTATCACTTCTAGTCGAATTTGAAGATGCAGAAGGAGATATCGGCACCATGCATATACGAGAAAATGGTTCTAGTGAGTGGCTGCAAATGAATCATGTGTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGACCATACTCTGTTAAACTCAGCTCTTCCACTGGTAGAAGCCTATCAGCTAGAGATGTTATTCCTAGCAATTGGGTTCCAAAGGCCACTTATACTTCTCGCCTAAATTTCTACCCTTAA 795 0.4893 MQLKLSSNLRLFCLGLALKFALLPTAVGQLQHHSLDMHWYPGTATWYGDPNGDGSTGGACGYGTLVDVKPLRARVGAVGSVLFMKGEGCGACYKVKCLDNSICSRRAVTVIITDECPGCPTDSTHFDLSGAAFGHMAISGENGQLRNRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGTMHIRENGSSEWLQMNHVWGANWCIIGGPLRGPYSVKLSSSTGRSLSARDVIPSNWVPKATYTSRLNFYP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00134 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Vifa6g00134 264 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Vifa6g00134 264 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Vifa6g00134 264 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Vifa6g00134 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Vifa6g00134 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vifa6g00134 264 Pfam Expansin C-terminal domain 167 247 IPR007117 -
Vifa6g00134 264 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Vifa6g00134 264 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Vifa6g00134 264 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Vifa6g00134 264 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Vifa6g00134 264 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Vifa6g00134 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 165 IPR007112 -
Vifa6g00134 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Vifa6g00134 264 CDD DPBB_EXPB_N 39 160 - -
Vifa6g00134 264 Pfam Lytic transglycolase 80 154 IPR009009 -
Vifa6g00134 264 SUPERFAMILY Barwin-like endoglucanases 35 164 IPR036908 -
Vifa6g00134 264 SMART dpbb_1 75 155 IPR007112 -
Vifa6g00134 264 Gene3D - 25 160 IPR036908 -
Vifa6g00134 264 FunFam Beta-expansin 3 162 263 - -
Vifa6g00134 264 FunFam Expansin B3 25 161 - -
Vifa6g00134 264 Gene3D - 161 259 IPR036749 -
Vifa6g00134 264 PANTHER EXPANSIN-B3 22 262 - -
Vifa6g00134 264 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00134 Vifa-Chr6 50909611 50911450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00134 9 201 Expansin Gene Family AT4G28250 68.912 2.29e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00134 K20628 - gmx:100804525 486.108