Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00124 ATGGCGTTAGATCAATACATGGAGAACACCGTCTCCCAAAATGATTCCTTTGAAGATAATCCATCTTTCAAAATCTCAAAAACCACCACAGATTCTGATAGAAATGCATCTGCTGGCTTTGACTGCAACATCTGCTTAGAGTGTGTGCAAGATCCAGTAGTCACGTTTTGTGGTCACCTTTACTGCTGGCCTTGCATTTACAAATGGATTCATATGCAAACTAGTATATCTTCTGGAAACCAGGAGAAGCAGAAGCCACAATGTCCAGTATGCAAATCAGAACTCTCTCAATCCTCACTAGTTCCATTATACGGCCGTGGCCAATCCACCACAAAGTCTGAAGCTCGGATGGATGTACCTCAAAGACCTTTGGGTCCCAGATCATATAATACTACAACTGTTTCACAACCTACTTATCAAAGTTATTATCATCCTCGACAGTTCAACTCAATTCCTACCAGTTACTACTCTTCACCCATGTCATTGGACAACTCATTTGGAATCTTCGGTGAAATGATATACGCGAGGGTGTTCGGTAACCAGATGGAAAACATGTATGCATATCGTAATTCATATAGTTTTCAAGGAAACAATAATCCAAGGGTTAGAAGACATTTAATGCAAGTTGATAAATCACTAAGCAGAATCTTTTTTTTCCTCCTTTGCTGCTTAGTTTTGTGTCTTCTCTTATTTTGA 696 0.3951 MALDQYMENTVSQNDSFEDNPSFKISKTTTDSDRNASAGFDCNICLECVQDPVVTFCGHLYCWPCIYKWIHMQTSISSGNQEKQKPQCPVCKSELSQSSLVPLYGRGQSTTKSEARMDVPQRPLGPRSYNTTTVSQPTYQSYYHPRQFNSIPTSYYSSPMSLDNSFGIFGEMIYARVFGNQMENMYAYRNSYSFQGNNNPRVRRHLMQVDKSLSRIFFFLLCCLVLCLLLF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00124 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa6g00124 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 122 IPR013083 -
Vifa6g00124 231 SUPERFAMILY RING/U-box 39 104 - -
Vifa6g00124 231 MobiDBLite consensus disorder prediction 1 33 - -
Vifa6g00124 231 CDD RING-HC_AtRMA-like 40 93 - -
Vifa6g00124 231 ProSiteProfiles Zinc finger RING-type profile. 42 92 IPR001841 -
Vifa6g00124 231 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 25 105 - -
Vifa6g00124 231 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Vifa6g00124 231 SMART ring_2 42 91 IPR001841 -
Vifa6g00124 231 MobiDBLite consensus disorder prediction 107 130 - -
Vifa6g00124 231 Pfam RING-type zinc-finger 42 73 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00124 Vifa-Chr6 46955749 46956444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00124 23 231 C3H Transcription Factor Family AT4G28270 40.654 6.64e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00124 K10666 - gmx:100786373 279.256