Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00111 ATGACTTTGACATGGCATTCATTCACTCTTCAATTAACCAATTCAGGTTTTGTTGAATCATGGTTCAGAGAATCATTGGTTGTGAAGCTCGGGATTTCTTTTAGTTCGAGAGTTACAAAGGTCCAAATAAACTTTTACAAAAAAAAGAAAAAGGGAAAAACATGGGAGAAACTTCAACTTGCTGCAAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATAGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGACACATTCCTGGAATTTTTACTAATCAGCTTCAAACTTCATTCAGCGAGCCGCGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCATAATTGCTTTCTGTACACTAATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGAGATAG 504 0.3869 MTLTWHSFTLQLTNSGFVESWFRESLVVKLGISFSSRVTKVQINFYKKKKKGKTWEKLQLAARVIVAIENPQDIIVQSARPYRQRAVLKFAQYTGAHAIAGRHIPGIFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPIIAFCTLILLCDMLTLEFLPTTKR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00111 167 Gene3D - 29 158 - -
Vifa6g00111 167 PANTHER 40S RIBOSOMAL PROTEIN SA 52 148 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa6g00111 167 SUPERFAMILY Ribosomal protein S2 42 148 IPR023591 -
Vifa6g00111 167 PRINTS Ribosomal protein S2 signature 136 147 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00111 167 PRINTS Ribosomal protein S2 signature 119 136 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00111 167 PRINTS Ribosomal protein S2 signature 94 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00111 167 ProSitePatterns Ribosomal protein S2 signature 2. 119 143 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00111 Vifa-Chr6 37667454 37669514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00111 52 148 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 92.784 3.11e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00111 K02998 - qsu:111996787 187.963