Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00110 ATGGAGACTGTTCTTTCCAATCACTCCCCCCCACTTTCTGTCTTCAAGGCTGTGAGCAAAGAAGAGGAAGAATCATTGGTTGGACAAATTGAAATATGGAAATACATGACACAGTTCACCGACTCGTTTGCTCTAAAAGCTGTTGTTGAGCTACGCATAGCTGACATAATAGATAGATATGGTAAACCAATATCCTTGTCACAAATTGTGCAAAATCTTGAAGATGCACCATCCCCTGATTCTTCACTTCTCTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAAATTTTCAGTGCAGAAAAATCCGAAACCGGAGAGATTCTCTACGGTTTAACACGTGCATCAAAATGGATCCTACAAGACGCAAGAATGACATTGGCACCTATGTTGTTGCTTGAGAATCACCCTTTTCATTTGAACCCTGCTAACTATATCAGTGAAATTGTAAGAGAAGGAACCAAAAATGGCACCGCTTTCTTTAGGTGTCATGGTCATGAACAATTCGAAATGACCGGTTTGGACTCGAAATACAATCACTTGTTTAACCAAGGTATGGTGTGCACCGCTAGGATCATGTCTAGGGCTGTTATTGCAGGGTACAAAGATGGGTTTAACCAGATTCAGTCTTTGGTTGATGTTGGTGGTGGTATTGGTGGATCTCTCTCTGAGATTGTTCGAGCTTATCCACATATTCAAGCTATTAACTTTGATTTGCCTCATGTTATTTCAACTGCACCTAAATTTCTTGGTATCACCCATGTTGAAGGAGACATGTTTGTTTCTGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAACAACTGCAGGAAGGCAATACCGGAAAAAACAGGAAAGGTGATCATTGTGGATCATGTTTTGGATCCAGAAGGAGCCGAACCATTTACAGACGCTGGCATAGCATTTGACATGTTGCTTCTTGCACATAATGCTGGTGGCAAGGAAAGGACCGAAGAGAACTGGAAATACCTATTCAAAGAGACTGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTTCCATCCATCATTGAGGCATTTCCAATCTAA 1113 0.4097 METVLSNHSPPLSVFKAVSKEEEESLVGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPISLSQIVQNLEDAPSPDSSLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDARMTLAPMLLLENHPFHLNPANYISEIVREGTKNGTAFFRCHGHEQFEMTGLDSKYNHLFNQGMVCTARIMSRAVIAGYKDGFNQIQSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVISTAPKFLGITHVEGDMFVSVPSADAIYMKWILHDWSDDHCIKILNNCRKAIPEKTGKVIIVDHVLDPEGAEPFTDAGIAFDMLLLAHNAGGKERTEENWKYLFKETGFPRYNIIKINALPSIIEAFPI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00110 370 CDD AdoMet_MTases 210 307 - -
Vifa6g00110 370 SUPERFAMILY "Winged helix" DNA-binding domain 23 121 IPR036390 -
Vifa6g00110 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 369 IPR016461 GO:0008168
Vifa6g00110 370 PIRSF O-mtase 13 370 IPR016461 GO:0008168
Vifa6g00110 370 Pfam O-methyltransferase domain 144 350 IPR001077 GO:0008171
Vifa6g00110 370 Gene3D Vaccinia Virus protein VP39 120 370 IPR029063 -
Vifa6g00110 370 FunFam O-methyltransferase family protein 120 368 - -
Vifa6g00110 370 Gene3D - 15 118 IPR036388 -
Vifa6g00110 370 Pfam Dimerisation domain 44 92 IPR012967 GO:0046983
Vifa6g00110 370 PANTHER O-METHYLTRANSFERASE 28 352 IPR016461 GO:0008168
Vifa6g00110 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 367 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00110 Vifa-Chr6 37280398 37282650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00110 43 356 Monolignol Biosynthesis Gene Families AT5G54160 37.888 2.12e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00110 K22588 - gmx:100812768 650.203