Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00108 ATGGGCTGTTGTGTCTCAACGAGCAGTCGAAGTACTTGTAGCAGTGGGAGCAACGGAGACATGATCACTCCATCCTGCTTAGATGTTGGATTCTGTGGACAAAAGAGAGCAAGGAGAACGTTCTCTGATCATGTTATTTCTCTACACCATTTATCATCCTTACCTAGCCGGATTTTTGCTAATGGAAAGAGTCGGGGTTCATGCATTTTTACGCAGCAGGGCCGCAAGGGAATTAATCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCCGAAGATATGATCTTTTGTGGTGTCTTTGATGGCCATGGTCCACATGGTCATCTGGTTGCACGCAAAGTGAGGGATACTTTGCCAGTAAAATTGCTTTCATTTTTGCATTCTAAAGAATCAAAGCAAAATGAATCAGGCAAAGCTTGTTTCAAACGGAACATAAAACCGGATGGTGGAGACTCTGAAAAGGACTGCTCTGCTGCTGAGGATAAACTGAACTCCACTTGGAGAGAAGCTTTCACGAAAGCATACAAGGCCATGGACAGAGAGCTCAAGTCTCATTCAAATCTAGATTGTTTCTGTAGTGGGAGCACATCTGTAACTATTGTGAAGCAGGGTTCAAATCTCTTCATGGGATATATTGGGGATTCTCGAGCAATAATGGGATCGAAAGACAACAATGACTCCATGGTGGCAGTTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCGGAAAGAATCAAGCAATGCAAGGGTAGGGTTTTTGCTTTGCAAGATGAGCCGGAAGTCCCAAGGGTGTGGTTGCCTTTTGATGATGCACCAGGATTAGCAATGGCTAGAGCGTTTGGAGATTTCTGTTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTAACAGACAGAGACCAATTCATTGTTCTTGCCTCTGATGGGGTTTGGGATGTTTTAAGTAATGAGGAGGTGGTTGAGATAGTATCGTCGGCACCAACACGATCATCAGCAGCAAGGATTCTGGTAAATTCAGCTGCACGAGAATGGAAACTCAAGTATCCAACTTCAAAGATGGATGACTGTGCTGTAGTGTGCGTATTTTTGGATGGTAAAATGGACTCAGAATCAGATTATGAAGAACAGGGCTTCTCTTCTGCAACCATTCAGAGCAACCATTCAGGGAATCCAATTGAATCAGATGATGGACAAAAGTCTGAGCCATCTTTGCAACGAAACTTTACTGTGAGATCATCAGAAGAAAATGAGACTTATGGAGCAGTGTCCATTGATGTTGAAGATGGAACAGCATCAGCTGATGATCAAAACTGGTTAGGTTTGGAAGGGGTCACCCGCGTAAACTCACTCGTCCAACTTCCTAGATTTTCGACCGAAAGGTCAAACTCTTGA 1416 0.4386 MGCCVSTSSRSTCSSGSNGDMITPSCLDVGFCGQKRARRTFSDHVISLHHLSSLPSRIFANGKSRGSCIFTQQGRKGINQDAMVVWEDFMSEDMIFCGVFDGHGPHGHLVARKVRDTLPVKLLSFLHSKESKQNESGKACFKRNIKPDGGDSEKDCSAAEDKLNSTWREAFTKAYKAMDRELKSHSNLDCFCSGSTSVTIVKQGSNLFMGYIGDSRAIMGSKDNNDSMVAVQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVNSAAREWKLKYPTSKMDDCAVVCVFLDGKMDSESDYEEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETYGAVSIDVEDGTASADDQNWLGLEGVTRVNSLVQLPRFSTERSNS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00108 471 Gene3D - 59 373 IPR036457 -
Vifa6g00108 471 PANTHER PROTEIN PHOSPHATASE 66 369 IPR015655 GO:0004722|GO:0006470
Vifa6g00108 471 FunFam probable protein phosphatase 2C 52 57 374 - -
Vifa6g00108 471 SMART PP2C_4 50 369 IPR001932 -
Vifa6g00108 471 CDD PP2Cc 65 371 IPR001932 -
Vifa6g00108 471 MobiDBLite consensus disorder prediction 382 427 - -
Vifa6g00108 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 371 IPR001932 -
Vifa6g00108 471 Pfam Protein phosphatase 2C 96 341 IPR001932 -
Vifa6g00108 471 SUPERFAMILY PP2C-like 60 373 IPR036457 -
Vifa6g00108 471 MobiDBLite consensus disorder prediction 381 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00108 Vifa-Chr6 35237893 35241329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00108 1 467 PP2C-type Phosphatase Gene Family AT1G03590 70.042 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00108 - - gmx:100798340 857.825