LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g00086	ATGGCTCCTTCCTTCACAGTAACTTCACGTTTTCATGAATCCTTCACCCGAAGTGCACTTCGCTCTTATCTCGCTGAGTTTATCTCAACTTTCTTCTATGTCCTTATCGTTGTTGCTTCTGGAATGTCCTCAAGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTTTGGTCGTGGGTGCTATTGCAAATGCGTTTGCTCTCTCCTCAGTTTTGTACAATGCATGGGACATCTCAGGTGGACATGTAAATCCTGCTGTAACATTTGCAATGGCTGTTGGAGGCCATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTGGCTCAACTTATTGCATCTGTTATTGCTTGCCTTTTCCTCAAAGTCATTGTTGTTGGAATGCATGTACCAACATATGTAATTGCAGAAGAGATGACAGGATTTGGAGCATCAATATTAGAGGGTATCCTAACATTTGTGTTAGTGTACACAATATATGCTGCAAGGGACACTAGGCGTGGTCAAGTTAGTTCGACAGGAACACTTGTAATTGGATTAATAGCAGGAGCAGGCGTGTTAGCAGCAGGACCATTCTCTGGTGGATCCATGAACCCTGCATGTGCTTTTGGCTCTGCTTCCATTGCTGGAACTTTCAGAAATCAAGCTGTCTATTGGGTTGGACCATTGGTTGGTGCTGCTGTTGCGGGTCTTCTTTATGACAATGTGTTGTTCCCTTCTCAGGATTCAGATTCAATTAGAGGAGGGGTTTCAAATGTGTAA	762	0.437	MAPSFTVTSRFHESFTRSALRSYLAEFISTFFYVLIVVASGMSSRKLMPDASLNPTSLVVGAIANAFALSSVLYNAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYVIAEEMTGFGASILEGILTFVLVYTIYAARDTRRGQVSSTGTLVIGLIAGAGVLAAGPFSGGSMNPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQDSDSIRGGVSNV	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g00086	253	ProSitePatterns	MIP family signature.	83	91	IPR022357	-
	Vifa6g00086	253	Pfam	Major intrinsic protein	17	233	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	FunFam	Probable aquaporin TIP5-1	5	245	-	-
	Vifa6g00086	253	Gene3D	Glycerol uptake facilitator protein.	5	248	IPR023271	-
	Vifa6g00086	253	PRINTS	Major intrinsic protein family signature	65	89	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	PRINTS	Major intrinsic protein family signature	147	165	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	PRINTS	Major intrinsic protein family signature	179	201	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	PRINTS	Major intrinsic protein family signature	102	121	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	PRINTS	Major intrinsic protein family signature	216	236	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	PRINTS	Major intrinsic protein family signature	21	40	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vifa6g00086	253	PANTHER	AQUAPORIN-8	9	239	IPR034294	-
	Vifa6g00086	253	SUPERFAMILY	Aquaporin-like	11	242	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g00086	Vifa-Chr6	23361351	23362463	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g00086	1	243	Major Intrinsic Protein MIP	AT3G47440	62.963	2.39e-106	306

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g00086	K09873		-	gmx:100801448	407.912

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa6g00086	6	23361351	23362463	Vifa6g00086	6	23361351	23362463	ECH