Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00086 ATGGCTCCTTCCTTCACAGTAACTTCACGTTTTCATGAATCCTTCACCCGAAGTGCACTTCGCTCTTATCTCGCTGAGTTTATCTCAACTTTCTTCTATGTCCTTATCGTTGTTGCTTCTGGAATGTCCTCAAGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTTTGGTCGTGGGTGCTATTGCAAATGCGTTTGCTCTCTCCTCAGTTTTGTACAATGCATGGGACATCTCAGGTGGACATGTAAATCCTGCTGTAACATTTGCAATGGCTGTTGGAGGCCATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTGGCTCAACTTATTGCATCTGTTATTGCTTGCCTTTTCCTCAAAGTCATTGTTGTTGGAATGCATGTACCAACATATGTAATTGCAGAAGAGATGACAGGATTTGGAGCATCAATATTAGAGGGTATCCTAACATTTGTGTTAGTGTACACAATATATGCTGCAAGGGACACTAGGCGTGGTCAAGTTAGTTCGACAGGAACACTTGTAATTGGATTAATAGCAGGAGCAGGCGTGTTAGCAGCAGGACCATTCTCTGGTGGATCCATGAACCCTGCATGTGCTTTTGGCTCTGCTTCCATTGCTGGAACTTTCAGAAATCAAGCTGTCTATTGGGTTGGACCATTGGTTGGTGCTGCTGTTGCGGGTCTTCTTTATGACAATGTGTTGTTCCCTTCTCAGGATTCAGATTCAATTAGAGGAGGGGTTTCAAATGTGTAA 762 0.437 MAPSFTVTSRFHESFTRSALRSYLAEFISTFFYVLIVVASGMSSRKLMPDASLNPTSLVVGAIANAFALSSVLYNAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYVIAEEMTGFGASILEGILTFVLVYTIYAARDTRRGQVSSTGTLVIGLIAGAGVLAAGPFSGGSMNPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQDSDSIRGGVSNV 253
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00086 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vifa6g00086 253 Pfam Major intrinsic protein 17 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 FunFam Probable aquaporin TIP5-1 5 245 - -
Vifa6g00086 253 Gene3D Glycerol uptake facilitator protein. 5 248 IPR023271 -
Vifa6g00086 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00086 253 PANTHER AQUAPORIN-8 9 239 IPR034294 -
Vifa6g00086 253 SUPERFAMILY Aquaporin-like 11 242 IPR023271 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g00086 Vifa-Chr6 23361351 23362463 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00086 1 243 Major Intrinsic Protein MIP AT3G47440 62.963 2.39e-106 306
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00086 K09873 - gmx:100801448 407.912
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00086 6 23361351 23362463 Vifa6g00086 6 23361351 23362463 ECH