Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g00086 | ATGGCTCCTTCCTTCACAGTAACTTCACGTTTTCATGAATCCTTCACCCGAAGTGCACTTCGCTCTTATCTCGCTGAGTTTATCTCAACTTTCTTCTATGTCCTTATCGTTGTTGCTTCTGGAATGTCCTCAAGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTTTGGTCGTGGGTGCTATTGCAAATGCGTTTGCTCTCTCCTCAGTTTTGTACAATGCATGGGACATCTCAGGTGGACATGTAAATCCTGCTGTAACATTTGCAATGGCTGTTGGAGGCCATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTGGCTCAACTTATTGCATCTGTTATTGCTTGCCTTTTCCTCAAAGTCATTGTTGTTGGAATGCATGTACCAACATATGTAATTGCAGAAGAGATGACAGGATTTGGAGCATCAATATTAGAGGGTATCCTAACATTTGTGTTAGTGTACACAATATATGCTGCAAGGGACACTAGGCGTGGTCAAGTTAGTTCGACAGGAACACTTGTAATTGGATTAATAGCAGGAGCAGGCGTGTTAGCAGCAGGACCATTCTCTGGTGGATCCATGAACCCTGCATGTGCTTTTGGCTCTGCTTCCATTGCTGGAACTTTCAGAAATCAAGCTGTCTATTGGGTTGGACCATTGGTTGGTGCTGCTGTTGCGGGTCTTCTTTATGACAATGTGTTGTTCCCTTCTCAGGATTCAGATTCAATTAGAGGAGGGGTTTCAAATGTGTAA | 762 | 0.437 | MAPSFTVTSRFHESFTRSALRSYLAEFISTFFYVLIVVASGMSSRKLMPDASLNPTSLVVGAIANAFALSSVLYNAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYVIAEEMTGFGASILEGILTFVLVYTIYAARDTRRGQVSSTGTLVIGLIAGAGVLAAGPFSGGSMNPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQDSDSIRGGVSNV | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g00086 | 253 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
Vifa6g00086 | 253 | Pfam | Major intrinsic protein | 17 | 233 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | FunFam | Probable aquaporin TIP5-1 | 5 | 245 | - | - | |
Vifa6g00086 | 253 | Gene3D | Glycerol uptake facilitator protein. | 5 | 248 | IPR023271 | - | |
Vifa6g00086 | 253 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | PRINTS | Major intrinsic protein family signature | 179 | 201 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | PRINTS | Major intrinsic protein family signature | 216 | 236 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa6g00086 | 253 | PANTHER | AQUAPORIN-8 | 9 | 239 | IPR034294 | - | |
Vifa6g00086 | 253 | SUPERFAMILY | Aquaporin-like | 11 | 242 | IPR023271 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g00086 | Vifa-Chr6 | 23361351 | 23362463 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g00086 | 1 | 243 | Major Intrinsic Protein MIP | AT3G47440 | 62.963 | 2.39e-106 | 306 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g00086 | K09873 | - | gmx:100801448 | 407.912 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa6g00086 | 6 | 23361351 | 23362463 | Vifa6g00086 | 6 | 23361351 | 23362463 | ECH |