Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00081 ATGTATATCGTAGGTTCTCGATGGTACTGTACTAATTCCTTCTGCTTTACACACATATCCGCAGCCACCTTATATGGACTCCAATCCTTCCGCTTTGCCTGCAGATCCGCGGCGACGCCGCCATGCTCACCGCATTTGTTTGAGTTAAGAAGATCCGCAACCATCTTACACGAACTCCAATCCTTGCGCTTTGCGTGCAGATCCACGGCAACGCCGCCAGGCTCACCGCATTTGTTTGAGTTAAGAAGGTATTCACAATATGTTCTTGTATCGGATCAATCTGATGAAACTCTGAAGGAAGTTGTGTTGGATACGTTGATGGAGTTTGTGAAGGTTGCTAATGGCGGCACCTTTCATTCTTCGTTGTATAACAGAATTATCAGTAGTATTTTCGCTGAATTTTTGATTGATTTACTAACATCAAAGTATTTCAAGTATATTGATGTCAGTTATTTTACATTCATAAGTCTAGAAAAGCTAGCTAGAAATTTGCAGGGGAAAGATGTTTCAGATGATAAAACTGCAAGTGTAGATGGCAATGATGAAAGTCAATTGAGCTCAAAGTTAGTAAAATCTATAGACACTGGAAATCTCAAACGACACTCAAACAGAAGGAGGAAACACCGAAAAGAAAGAACAACCAAATCTCATTCTCCGTCGAACTCAACCCTTTGTCATCTCACCTACGTCGTCGTCATCCCTCTCTTCATTTGTATCCGTTGTGGCTGCAGCAAGGGTTCTCTGACTGGACTTGCTCCACTTGAAGCAGTGCTCTTTGATATTGACGGAACTCTGTGTGATTCTGACCCACTTCATTATCTTGCTTTCCGTGAGATGCTCCAACAGATTGGTTTCAATGGAGGCAATCCTATAACAGAGGAATTTTTTATTGACACTGTTGCTGGCAAGCATAATAATGACATTGCCTTGGCTCTCTTTCCTGGTGAGCTGGAGAGAGGCTTAAAGTTTTTAGATGATAAGGAAGCCATGTTTCGGAGATTAGCAGCTGAGCAACTGAAGGCTTTAAATGGCCTTGATAAAGTGAGAAAATGGATTCAAGATCGTGGGTTGAAACGAGCTGCAGTTACCAATGCTCCAAGACCAAATGCAGAACTCGCTCTCTCAAAACTTGGTCTCTCAGATTTCTTTCAAGCTGTTATTATTGGTGATGAATGTGAACATCCCAAACCTCATCCAGAGCCATACTTGAAAGGCCTTGAAGCTCTAAAAGCATCTAAAGATCACACGTTTGTATTTGAGGATTCTGTTTCAGGAATCAAAGCTGGTGTGGCTGCTGGGATGCCTGTTATCGGTTTATCTACCCGAAACCCAGAGCATTTGCTGATGGGAGCAAAACCCACCTTTCTGATTAAAGATTATGATGATCCAAAATTGTGGGCAGCTCTCGAAGAACTTGACAATTACAGGGGGAAACTTAATGCCAAGGAAATTCCAATGATGGTAGTGCTTTGGACTGTAATATCTTATGCTGTGCCAGGCAAAGTTCCACCTATTGTTCCTAGAAGGTTGTTTTGTCCACTTCCTTGGGATCCTGCATCTTTCTACCATTGGACAGTAATGAAGGATATGGTAAATGTACCATTGCTGTATATCTACGGAGCATTTATTCCGGCAATGATGATAGCAGGTTTATACTTTTTTGATCATAGTGTAGCTTCCAAGATGGCTCAACAGAAGGAGTTCAACCTTCAAAAACCATCTGCATACCACTATGATGTTTTTCTCCTTGGAATAATGACTTTGATTTGCGGTCTTCTCGGTCTTCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCTATGCATACAAAGAGTTTAGCAATTCTTCGGAGGCAGATGATTCGAAAGAAGGTGGTGAAAGGTGCCAAGGAATGCATTAGGCACCAAGGGACGAACGCTGAATTATACGGAACGATGCGCTCCGTTTTCATAGAAATGGATGCAGTGCCCACGGCTAGAGAGTTGGAGAATTTGAAGGATGCTGTAATGAATACTAATCCTGGTACAAAGGAAAAGTTTGATCCTGTAAAACATATAGATGCGTATTTGCCTGTTCGAGTTAACGAGCAAAGATTGAGCAACTTATTGCAATCTGTCTTTGTTGCCTTATTACTATTAGCTACATCTCTTATCAAAAGGATACCTACCTCAGTTCTTTGGGGATATTTTGCTTACATGGAAATTGATAGTCTTCCAGGGAATCAATTTTTTGAGAGAATTTTGCTTCTTTTCATCACCCCGAAAAGGCAGTACAAAGTTTTGGAAGGAACTCATTCGTCGTTTGTGGAGTCAGTACCATTCAAGACAATAGCTGGATTTACAGCTTTACAGCTTCTATACTTTTTTCTGTGCTATGGTTTAACATGGATACCTATTGGTGGAATATTGTTTCCAGTACCTTTCTTCCTTCTCATAATGCTAAGAGAGAAACTGCTTCCAAGATTATTCAAGGCAAGCCATCTTCAGGAGTTAGATGCTTTTGTTAAACATCGTCCGGCCAAATATTCTTTTTGTATAAAACAAGATGATTGGGATAAATTTGTAGCCCAACATATGACTGCAAAGTTTCAGTTAGTGATGAGAATCGAGAAAGTAGCTGAGAGTCGACTACCTAGTGATAAAGGTTCTTGCAACCCTGGATCATTTGGCAACATTCCCGAGGTAATTGGTTCTTGCAACCCTGGATCATTTGGCAACATTCTATGA 2724 0.4115 MYIVGSRWYCTNSFCFTHISAATLYGLQSFRFACRSAATPPCSPHLFELRRSATILHELQSLRFACRSTATPPGSPHLFELRRYSQYVLVSDQSDETLKEVVLDTLMEFVKVANGGTFHSSLYNRIISSIFAEFLIDLLTSKYFKYIDVSYFTFISLEKLARNLQGKDVSDDKTASVDGNDESQLSSKLVKSIDTGNLKRHSNRRRKHRKERTTKSHSPSNSTLCHLTYVVVIPLFICIRCGCSKGSLTGLAPLEAVLFDIDGTLCDSDPLHYLAFREMLQQIGFNGGNPITEEFFIDTVAGKHNNDIALALFPGELERGLKFLDDKEAMFRRLAAEQLKALNGLDKVRKWIQDRGLKRAAVTNAPRPNAELALSKLGLSDFFQAVIIGDECEHPKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLSTRNPEHLLMGAKPTFLIKDYDDPKLWAALEELDNYRGKLNAKEIPMMVVLWTVISYAVPGKVPPIVPRRLFCPLPWDPASFYHWTVMKDMVNVPLLYIYGAFIPAMMIAGLYFFDHSVASKMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAILRRQMIRKKVVKGAKECIRHQGTNAELYGTMRSVFIEMDAVPTARELENLKDAVMNTNPGTKEKFDPVKHIDAYLPVRVNEQRLSNLLQSVFVALLLLATSLIKRIPTSVLWGYFAYMEIDSLPGNQFFERILLLFITPKRQYKVLEGTHSSFVESVPFKTIAGFTALQLLYFFLCYGLTWIPIGGILFPVPFFLLIMLREKLLPRLFKASHLQELDAFVKHRPAKYSFCIKQDDWDKFVAQHMTAKFQLVMRIEKVAESRLPSDKGSCNPGSFGNIPEVIGSCNPGSFGNIL 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00081 907 Gene3D Putative phosphatase; domain 2 269 337 IPR023198 -
Vifa6g00081 907 NCBIfam HAD-IA family hydrolase 335 438 IPR006439 -
Vifa6g00081 907 MobiDBLite consensus disorder prediction 200 214 - -
Vifa6g00081 907 SUPERFAMILY HAD-like 252 472 IPR036412 -
Vifa6g00081 907 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 254 462 - -
Vifa6g00081 907 Gene3D - 255 462 IPR023214 -
Vifa6g00081 907 CDD HAD_BPGM-like 256 439 - -
Vifa6g00081 907 SFLD Haloacid Dehalogenase 254 462 - -
Vifa6g00081 907 Pfam HCO3- transporter family 691 781 IPR011531 GO:0006820|GO:0016020
Vifa6g00081 907 Pfam HCO3- transporter family 484 618 IPR011531 GO:0006820|GO:0016020
Vifa6g00081 907 Pfam Haloacid dehalogenase-like hydrolase 257 438 IPR041492 -
Vifa6g00081 907 PANTHER ANION EXCHANGE PROTEIN 484 834 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa6g00081 907 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00081 Vifa-Chr6 22049172 22054228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00081 484 832 Antiporters AT5G25430 68.820 2.48e-173 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00081 K24194 - gmx:100792745 565.844