Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g00080 | ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGGGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTAAATATTCAGCTCCCTCTACAAGGAGCTGCGTGTTCATTCGCATTGTTGCCATCATTCTATTCAAGTTTACTACTGTGCATACTTTTGCTAGCATTTCTTCTTCAAATAGTCAGGAAACAACATCAGTGAGAAGGCTTATGAGAGGGTCGCCACTCTTTTGGATTGGTGTTGGTGTTGGGTTTTCTGCACTATTTTCAGTGGTAGCTTCAAGATTAAAGAAATATGCAATGCAACAAGCTTTAAACACCATGATGGGCCAGATGAATACACAAAATAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCCTTCCCCTTTCCCATGCCTTCAGCTTCAGGGCCCGCTACACCTGCTGGCTTTGCTGGTAATCAATCTCAAGCAACTTCTGCAAGAACTGCCTCTCAATCTACTGTCACAGTAGACATACCTTCAACCAAAGTAGAAGCAGCAGCCTCGGCCCCAAACATTAATGTTAAAGAAGAAGTGGAAGTAAAGAATGAACCAAAAAAATCCGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGAAGAATGCTTTTGAAAGATTTAAAGATGTTGATGAATCAAGTTCATTCAAGGAAGCCCGTGCTCTAGCTGAAGCTTCTCAAAATGGAGCTCCTTTTAACCAAGGTTTTGGCAATTCACCCGGTTCTCTATCTGCACGTAAGTAA | 1029 | 0.4072 | MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFKYSAPSTRSCVFIRIVAIILFKFTTVHTFASISSSNSQETTSVRRLMRGSPLFWIGVGVGFSALFSVVASRLKKYAMQQALNTMMGQMNTQNNNPFDSGAFSPGSPFPFPMPSASGPATPAGFAGNQSQATSARTASQSTVTVDIPSTKVEAAASAPNINVKEEVEVKNEPKKSAFVDVSPEETVQKNAFERFKDVDESSSFKEARALAEASQNGAPFNQGFGNSPGSLSARK | 342 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g00080 | 342 | SMART | ringv_2 | 15 | 62 | IPR011016 | GO:0008270 | |
Vifa6g00080 | 342 | Pfam | Protein of unknown function (DUF3675) | 67 | 144 | IPR022143 | - | |
Vifa6g00080 | 342 | CDD | RING_CH-C4HC3_MARCH | 16 | 62 | - | - | |
Vifa6g00080 | 342 | MobiDBLite | consensus disorder prediction | 314 | 342 | - | - | |
Vifa6g00080 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 72 | IPR013083 | - | |
Vifa6g00080 | 342 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 8 | 68 | IPR011016 | GO:0008270 | |
Vifa6g00080 | 342 | PANTHER | PROTEIN TIC 40, CHLOROPLASTIC | 134 | 340 | - | - | |
Vifa6g00080 | 342 | MobiDBLite | consensus disorder prediction | 216 | 250 | - | - | |
Vifa6g00080 | 342 | MobiDBLite | consensus disorder prediction | 322 | 342 | - | - | |
Vifa6g00080 | 342 | MobiDBLite | consensus disorder prediction | 229 | 250 | - | - | |
Vifa6g00080 | 342 | Pfam | RING-variant domain | 16 | 61 | IPR011016 | GO:0008270 | |
Vifa6g00080 | 342 | SUPERFAMILY | RING/U-box | 13 | 66 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g00080 | Vifa-Chr6 | 22034108 | 22037463 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g00080 | 15 | 62 | C3H Transcription Factor Family | AT2G37950 | 47.059 | 2.69e-07 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g00080 | - | - | gmx:100790904 | 221.09 |