Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00080 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGGGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTAAATATTCAGCTCCCTCTACAAGGAGCTGCGTGTTCATTCGCATTGTTGCCATCATTCTATTCAAGTTTACTACTGTGCATACTTTTGCTAGCATTTCTTCTTCAAATAGTCAGGAAACAACATCAGTGAGAAGGCTTATGAGAGGGTCGCCACTCTTTTGGATTGGTGTTGGTGTTGGGTTTTCTGCACTATTTTCAGTGGTAGCTTCAAGATTAAAGAAATATGCAATGCAACAAGCTTTAAACACCATGATGGGCCAGATGAATACACAAAATAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCCTTCCCCTTTCCCATGCCTTCAGCTTCAGGGCCCGCTACACCTGCTGGCTTTGCTGGTAATCAATCTCAAGCAACTTCTGCAAGAACTGCCTCTCAATCTACTGTCACAGTAGACATACCTTCAACCAAAGTAGAAGCAGCAGCCTCGGCCCCAAACATTAATGTTAAAGAAGAAGTGGAAGTAAAGAATGAACCAAAAAAATCCGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGAAGAATGCTTTTGAAAGATTTAAAGATGTTGATGAATCAAGTTCATTCAAGGAAGCCCGTGCTCTAGCTGAAGCTTCTCAAAATGGAGCTCCTTTTAACCAAGGTTTTGGCAATTCACCCGGTTCTCTATCTGCACGTAAGTAA 1029 0.4072 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFKYSAPSTRSCVFIRIVAIILFKFTTVHTFASISSSNSQETTSVRRLMRGSPLFWIGVGVGFSALFSVVASRLKKYAMQQALNTMMGQMNTQNNNPFDSGAFSPGSPFPFPMPSASGPATPAGFAGNQSQATSARTASQSTVTVDIPSTKVEAAASAPNINVKEEVEVKNEPKKSAFVDVSPEETVQKNAFERFKDVDESSSFKEARALAEASQNGAPFNQGFGNSPGSLSARK 342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00080 342 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa6g00080 342 Pfam Protein of unknown function (DUF3675) 67 144 IPR022143 -
Vifa6g00080 342 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa6g00080 342 MobiDBLite consensus disorder prediction 314 342 - -
Vifa6g00080 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa6g00080 342 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa6g00080 342 PANTHER PROTEIN TIC 40, CHLOROPLASTIC 134 340 - -
Vifa6g00080 342 MobiDBLite consensus disorder prediction 216 250 - -
Vifa6g00080 342 MobiDBLite consensus disorder prediction 322 342 - -
Vifa6g00080 342 MobiDBLite consensus disorder prediction 229 250 - -
Vifa6g00080 342 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa6g00080 342 SUPERFAMILY RING/U-box 13 66 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g00080 Vifa-Chr6 22034108 22037463 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00080 15 62 C3H Transcription Factor Family AT2G37950 47.059 2.69e-07 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00080 - - gmx:100790904 221.09