Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00077 ATGGCCAAGAAGAACAAGAGCTGGTTTAATCTGGTGAAGAGCCTTTTCATATGGGACACACATTCCACACAAGAGAAGAAAGAGAAAAGAAGGAAATGGATATTTGGAAAGCTAAAAACCAAGAAGTTACCTTCAATTACAGCTCCAGCAACAACATCAAATGAAGCTGAGGAGGAGGGAAAAACCAAGCATTCTCAAGTTGTTATGCTTAATGAAGTTTCACAATCTGGTTATCAAAAAAATCAAGATGGCTCAGAAGAATCTGAACCTGTTGAAACTAGGAATGGTGTTCCTCGATCGATATATCTGTGCCAGAGAGAGATTCAAGAATTTGCAGCCATCAAAATTCAAACTGCTTTTAGGGGCTACCTTGCAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTAAAACTTCAAGCGATTATTCGTGGGCGAGCAGTGAGACGCCAAGCTATGAGTACTCTCAAGAGCTTGCAGTCCATTGTAAGTATTCAATCAAAGATATGTGCAAGGAGACTCCAAATGGTTGAAGGAAGATGGGATTCTGTTGAAGATGAAGAGACTCTTTATTCTAAAGACAAGATCATTAGGATGGACTCAAACAGCGAAAGAAAGTGGGATGACAGCACTTTATTGAAGGAAGAGGTAGACGCCTGTTGCATGATCAAGAAAGAAGGCATTATTAAGAGAGAAAGAATAAAAGAATACACATTTAATCATAGAAGGTCAGCAGAGTCAGAAAGAAGTAAAGTGAACGGAAGATGGAGGTACTGGCTAGAGCAATGGGTAGATACACAGCTTTCTAAAAGCAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCAAATTCTAGCAGAAAACAACTAAATCTAAGAAACTCTACTCAGCGACAAAATCCAAATCAACTTGAAGGAATGGATTCGCCACTAGTTTCATCAAGAAAATGTTTTCCTCACGGGCGACAAAGTTCAATAGGAGAAGAGCAATCATTTTCAAGCTCCCCTGCAACTCCTGCATACATGGCTGCAACGGAATCAGCAAGAGCAAAAGCAAGATCAACAAGCTCACCAAAAGCAAGGTCATGGAATTATGACATGAACTCGGATAGCTATTTATCACCTAGCAAGAAAAAGTTATCAATTGTTTCATCTGTTAACAGTGAAGTGGTTAATAATGGTGCTAGAATGGGGAAGCTTAATGGTTGTAACCAACAAAGATCTCCAAGTTTTAAGGGTATTTCAGTGCCTTTAAAATCAAACACAAGTATTAAGGATCTTAGCATTAATTCAGATTGCTCATTGTCTAATTGGGATAGACAAAGTTCCTTTAAATGA 1335 0.3865 MAKKNKSWFNLVKSLFIWDTHSTQEKKEKRRKWIFGKLKTKKLPSITAPATTSNEAEEEGKTKHSQVVMLNEVSQSGYQKNQDGSEESEPVETRNGVPRSIYLCQREIQEFAAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMSTLKSLQSIVSIQSKICARRLQMVEGRWDSVEDEETLYSKDKIIRMDSNSERKWDDSTLLKEEVDACCMIKKEGIIKRERIKEYTFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSNSSRKQLNLRNSTQRQNPNQLEGMDSPLVSSRKCFPHGRQSSIGEEQSFSSSPATPAYMAATESARAKARSTSSPKARSWNYDMNSDSYLSPSKKKLSIVSSVNSEVVNNGARMGKLNGCNQQRSPSFKGISVPLKSNTSIKDLSINSDCSLSNWDRQSSFK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00077 444 MobiDBLite consensus disorder prediction 348 377 - -
Vifa6g00077 444 MobiDBLite consensus disorder prediction 45 64 - -
Vifa6g00077 444 PANTHER IQ-DOMAIN 5-RELATED 1 380 - -
Vifa6g00077 444 MobiDBLite consensus disorder prediction 284 308 - -
Vifa6g00077 444 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Vifa6g00077 444 MobiDBLite consensus disorder prediction 284 377 - -
Vifa6g00077 444 Gene3D - 107 161 - -
Vifa6g00077 444 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Vifa6g00077 444 MobiDBLite consensus disorder prediction 317 340 - -
Vifa6g00077 444 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Vifa6g00077 444 Pfam Protein of unknown function (DUF4005) 325 397 IPR025064 -
Vifa6g00077 444 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00077 Vifa-Chr6 20376389 20378301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00077 1 444 IQD Protein Family AT5G13460 48.712 2.75e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00077 - - gmx:100800192 593.193