Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00072 ATGGAGAAGTACCTGAGAGAAAACTTTTACGTACAACCCAAACGACCCTCAGAAGACGCTCAACTCCGATGGAGATCCGCCGTATCCGTCGTCAAGAACCCTCGCCGTCGCTTCCGATGGGTTGCCAATCTCGCCCAACGTGCCGACGCCGAACAAAAACGCAAGAAACTCCAGGAAAAGATACGAGTGGCACTCTGTGTGCAAAAAGCAGCATTGCATTTTATAACCGCTGGAACCCGAAAAACTGGTAATTACATGCTCTCCAAAGAGATTCAAGATGCAGGTTTTGGAATCAACCCGGACGAATTAGCATCCATTGTCAGATCCCATGACACCAAATGTTTAGAACATCATGAAGGAGTTGAAGGATTAGCAAAAGCTGTACGCGTTAAGTTTCAAGAAGGCGTGAGTTCCAGCGATGTAAAACATAGACAACATATCTATGGTCATAACCGCCATACTGAGAAACCTTCAAGAAGTTTCTGGATGTTTGTTTGGGATGCAATGCAAGACTTAACACTGATTATCCTTATTCTATGTTCCATTCTTTCAATCGGTGTTGGAATCTTAACCCAAGGTTTGCCTAAAGGTATGTATGACGGAGTTGGAATCATACTATGCATTTTTTTAGTTGTTTTTGTCACTTCATTAAGTGACTATAAACAGTCTTTGCAATTTAAGGATTTGGATAAAGAGAAAAAAAATGTAAGCATTCATATTACAAGAGATAGTAGAAGACAGAAGGTTTCTATTCATGATCTAGTGGTTGGAGATATAGTTCATCTCGCAATCGGAGACATAGTTCCTGCTGATGGATTATTTATATCTGGTTTTAGTCTATTGATCGATGAATCAAGTTTGTCGGGCGAGAGTGAAGCAGTGAATGCTGACAAACAAAAGCCTTTTCTTTTATGTGGAACCACAGTTCAAGATGGTTCTGCCAAGATGCTAGTGACTGCGGTTGGTATGAAGACGGAATGGGGAAGATTGATGGACACTTTGAATGAAGGTGGTGATGATGAAACACCTCTTCAGGTTAAACTAAATGGTGTTGCTACACTTATTGGAAAGATAGGGTTAGGTTTTGCATTGGTAACATTCTTAGTTCTAACTGGTAGGTTTTTGTTGGTGAAAATATCTCATGATAGCATCACTAAATGGTCTCTAGATGATGCATCTAAGCTTCTCAGTTTCTTTGCTACTGCTGTTATTATAATAGTTGTGGCAGTTCCTGAAGGGTTACCTTTAGCAGTTACACTAAGTCTTGCATTTGCAATGAAGAAACTGATGAATGATAAGGCACTAGTTAGGCACTTATCTGCATGTGAAACAATGGGTTCTGCTGGTTGCATTTGCACTGATAAAACTGGAACTTTGACTACAAATCAAATGGTCGTTGACAAAATATGGATTTGTGAACAAACTAAGGCAATTAAAACCGGAAATTTCGATGATGGTGTGTTGAAGAAATCAATTCCTGTGGAGATATTTGATCTACTTTTGCAGTCAATATTTCAGAATACTGCCTCAGAGGTTGTTAAAGGTGAAGATGGAAAGAACAAGGTGATGGGAACTCCAACAGAATCAGCATTGCTTGGATTTGGTTTGATTTTAGGAGGTGATACTAAGTTTTACAATGACAAGTATAAGATAATGAAAGTTGAACCTTTCAATTCAAACCGAAAAAAGATGTCAGTTCTTGTTTCTCTTCCCGATAGCACCAACAAAACTAGAGCATTTTGTAAAGGAGCATCAGAAATAGTGGTTAGAATGTGTGACAAAGTTGTTAATGCAGAAGGAAAAGTTGTTGATTTGAATGAACAACTGAGAAATAAAATCAATGAGGCTATTAATGGTTTTGCTTGTGATGCACTGAGAACACTATGCATAGCTTTTAAGGATATGGAAGGAACCACTGAAAGTGATAGCAGTATTCCTGAGGATAAATATACTCTAATTTCAATAATTGGAATCAAGGATCCAGTGAGACCTGGAGTAAAAGAAGCTGTTAAGACTTGTTTGGCAGCTGGAATCATTGTAAGAATGGTAACTGGTGATAATATAAACACTGCTAAAGCTATAGCTAGAGAATGTGGTATTTTGACAGATGGTTTGGCCATAGAGGGACCAGATTTCAGAAACAAGACTCAGCAAGAAATGGAAGAGATTATACCTAAATTGCAGGTAATGGCTCGATCTTTGCCTCTTGATAAGCACACCTTAGTGACTCATTTGAGGAAGGACTTTAATGAAGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCTTTGCATGAAGCTGATATTGGATTTGCCATGGGTATTGCTGGCACAGAGGTAGCAAAAGAAAATGCAGATGTGATTGTGATGGATGATAACTTTACTACAATAGTGAACGTTACGAGATGGGGCCGTTCTGTTTATATTAACATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAATGTCGTAGCTCTCATGCTGAATTTTGTTTCAGCTTGTGTATCAGGTTCTGCTCCTCTTACTGCTGTTCAAATGCTATGGGTAAACATGATAATGGACACACTAGGTGCATTGGCATTGGCTACAGAACCTCCCCATGATGGATTGATGAAGAGACCACCTATTGGAAGGAATGCCAAGTTCATCACGGGGGTCATGTGGAGGAACATCATTGGTCAGAGTCTCTATCAAACTATAGTCCTTTTGGTTCTTAAATTTCGCGGGGAACAAATTCTCAACCTCAACGGACCCAATGCTACCATTACTCTAAATACATTCATATTCAACACCTTTGTGTTTTGCCAGGTATTCAATGAGGTAAACAGCCGCGACATGGAAAAGATAAATGTTTTGGAAGGCCTATTGAGCAGCTGGATATTTCTGATAGTAATGGCCGCAACAATATGCTTTCAAATCATAATAGTTGAATTTCTTGGTGCTTTTGCTCAAACAGTGCCACTCAGTAGTGACTTATGGCTCATAAGTGTGATGATCGGTGCAGTAAGTTTACTGGTAGCTGTTGTCCTAAAGTGCATTCCTGTTCCTGTCAAAAATTACGTCGCTACGCATCACGATGGCTACGAGCAGCTTCCCAGTGGACCAGAGTTGGCATGA 3123 0.3977 MEKYLRENFYVQPKRPSEDAQLRWRSAVSVVKNPRRRFRWVANLAQRADAEQKRKKLQEKIRVALCVQKAALHFITAGTRKTGNYMLSKEIQDAGFGINPDELASIVRSHDTKCLEHHEGVEGLAKAVRVKFQEGVSSSDVKHRQHIYGHNRHTEKPSRSFWMFVWDAMQDLTLIILILCSILSIGVGILTQGLPKGMYDGVGIILCIFLVVFVTSLSDYKQSLQFKDLDKEKKNVSIHITRDSRRQKVSIHDLVVGDIVHLAIGDIVPADGLFISGFSLLIDESSLSGESEAVNADKQKPFLLCGTTVQDGSAKMLVTAVGMKTEWGRLMDTLNEGGDDETPLQVKLNGVATLIGKIGLGFALVTFLVLTGRFLLVKISHDSITKWSLDDASKLLSFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNQMVVDKIWICEQTKAIKTGNFDDGVLKKSIPVEIFDLLLQSIFQNTASEVVKGEDGKNKVMGTPTESALLGFGLILGGDTKFYNDKYKIMKVEPFNSNRKKMSVLVSLPDSTNKTRAFCKGASEIVVRMCDKVVNAEGKVVDLNEQLRNKINEAINGFACDALRTLCIAFKDMEGTTESDSSIPEDKYTLISIIGIKDPVRPGVKEAVKTCLAAGIIVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTQQEMEEIIPKLQVMARSLPLDKHTLVTHLRKDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFTTIVNVTRWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAKFITGVMWRNIIGQSLYQTIVLLVLKFRGEQILNLNGPNATITLNTFIFNTFVFCQVFNEVNSRDMEKINVLEGLLSSWIFLIVMAATICFQIIIVEFLGAFAQTVPLSSDLWLISVMIGAVSLLVAVVLKCIPVPVKNYVATHHDGYEQLPSGPELA 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00072 1040 Gene3D - 167 1015 - -
Vifa6g00072 1040 Gene3D - 449 801 IPR023214 -
Vifa6g00072 1040 Pfam haloacid dehalogenase-like hydrolase 450 770 - -
Vifa6g00072 1040 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa6g00072 1040 FunFam Calcium-transporting ATPase 654 801 - -
Vifa6g00072 1040 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Vifa6g00072 1040 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Vifa6g00072 1040 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Vifa6g00072 1040 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Vifa6g00072 1040 PRINTS P-type cation-transporting ATPase superfamily signature 676 686 - -
Vifa6g00072 1040 PRINTS P-type cation-transporting ATPase superfamily signature 654 665 - -
Vifa6g00072 1040 Pfam Cation transporting ATPase, C-terminus 841 1014 IPR006068 -
Vifa6g00072 1040 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 666 IPR023299 GO:0000166
Vifa6g00072 1040 SUPERFAMILY HAD-like 451 861 IPR036412 -
Vifa6g00072 1040 FunFam Calcium-transporting ATPase 773 1019 - -
Vifa6g00072 1040 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Vifa6g00072 1040 Gene3D - 16 76 - -
Vifa6g00072 1040 SFLD p-type atpase 434 808 IPR044492 -
Vifa6g00072 1040 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g00072 1040 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g00072 1040 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g00072 1040 FunFam Calcium-transporting ATPase 16 76 - -
Vifa6g00072 1040 Coils Coil 47 67 - -
Vifa6g00072 1040 SUPERFAMILY Calcium ATPase, transduction domain A 238 333 IPR008250 -
Vifa6g00072 1040 FunFam Calcium-transporting ATPase 462 661 - -
Vifa6g00072 1040 NCBIfam HAD-IC family P-type ATPase 721 844 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g00072 1040 NCBIfam HAD-IC family P-type ATPase 204 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g00072 1040 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1017 IPR023298 -
Vifa6g00072 1040 Coils Coil 595 615 - -
Vifa6g00072 1040 PANTHER CATION TRANSPORTING ATPASE 79 1017 - -
Vifa6g00072 1040 Gene3D - 135 335 - -
Vifa6g00072 1040 Pfam Cation transporter/ATPase, N-terminus 116 184 IPR004014 -
Vifa6g00072 1040 SFLD Haloacid Dehalogenase 434 808 - -
Vifa6g00072 1040 CDD P-type_ATPase_Ca_PMCA-like 141 889 - -
Vifa6g00072 1040 Pfam E1-E2 ATPase 238 430 - -
Vifa6g00072 1040 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Vifa6g00072 1040 Gene3D - 462 661 IPR023299 GO:0000166
Vifa6g00072 1040 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 48 IPR024750 GO:0005516
Vifa6g00072 1040 FunFam Calcium-transporting ATPase 213 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00072 Vifa-Chr6 17505147 17527254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00072 57 1037 Primary Pumps ATPases AT3G57330 67.617 0.0 1365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00072 K01537 - gmx:100801260 1731.84