Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00059 ATGGCAGAATCAGACGATGAGTCAGGTGGTCAAGCAGCATCAGGGAGCAAGGAACTTTTACAAGAAAGACTCCTTCCCATAGCCAACGTGGGAAGGATCATGAAGAAAGCTTTACCATCAAAAGCAAAGATATCAAAGGAATCAAAAGAAACTATGCAAGAGTGTGTATCTGAGTTCATAAGTTTCATAACTGGAGAAGCATCTGAAAAGTGTCAGAAGGAGAAGAGGAAAACAATTAACGGTGATGATCTTCTTTGGGCCATGACTACACTTGGTTTTGAACAATATGCTCAACCTCTTAAGCTTTATCTTAATAAGTATAGGGAAATTGAAGGAGATAACAATTTTTCTATGTATATCATTGCTGGGAAAGACCAGCAGCCTAGTAATACTCATCATCCATTCTTCCAAGGCTGA 417 0.3909 MAESDDESGGQAASGSKELLQERLLPIANVGRIMKKALPSKAKISKESKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLLWAMTTLGFEQYAQPLKLYLNKYREIEGDNNFSMYIIAGKDQQPSNTHHPFFQG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00059 138 Gene3D Histone, subunit A 12 132 IPR009072 GO:0046982
Vifa6g00059 138 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa6g00059 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Vifa6g00059 138 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Vifa6g00059 138 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Vifa6g00059 138 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Vifa6g00059 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa6g00059 138 SUPERFAMILY Histone-fold 21 115 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00059 Vifa-Chr6 11983814 11984230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00059 1 113 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.684 1.19e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g00059 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00059 K08065 - gmx:100305641 182.185