Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00058 ATGGACAGTGGAGGTGGTTTTCATGGCTACCGCAAGTTTCCCAACACTACCTCTGGGACATTGAAGCTATCATCAGTGTCTGAGATGAACATGAGGCAGCAAGTAGGAGGAGAACATATCAACAACAGTAACCATTCATCAGCAGGATCAGAACAAGACAATGAATGCATTGTTAGGGAACAAGACCGTTTTATGCCAATTGCAAATGTGATAAGGATCATGCGTAAGATTCTACCACCGCATGCAAAAATCTCAGACGATGCAAAGGAAACAATTCAAGAGTGTGTATCTGAGTATATCAGTTTCATAACCGGTGAAGCAAATGAACGTTGTCAGAGAGAGCAAAGGAAGACGATAACTGCTGAAGATGTTCTTTGGGCTATGAGTAAGCTAGGATTTGATGATTACATTGAACCTCTTACTATGTATCTTCATCGTTACCGCGAGCTTGAAGGTGATCGTACTTCAATGAGAGTTGAACCATTGGGAAAGAGAACAATAGATCAATATGGAGGTGGTTTAGGGGGATTTGTTCCGCAATTTCATATTGGTCATCCAAATGGAGGGTATTATGGTAATCCACCAGCTTATATGATGAGGGATGGTAGTAGTAATAATGCATCAAATGTTGCTGGAGGTTCTTCTTCTCATTCTCAAGGTGGACATGGAAATGTTGATGCCAATGGACATCATCATCATCATCACCATCATCAATATAAATGA 723 0.408 MDSGGGFHGYRKFPNTTSGTLKLSSVSEMNMRQQVGGEHINNSNHSSAGSEQDNECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRTIDQYGGGLGGFVPQFHIGHPNGGYYGNPPAYMMRDGSSNNASNVAGGSSSHSQGGHGNVDANGHHHHHHHHQYK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00058 240 FunFam Nuclear transcription factor Y subunit B-6 53 169 - -
Vifa6g00058 240 SUPERFAMILY Histone-fold 61 158 IPR009072 GO:0046982
Vifa6g00058 240 MobiDBLite consensus disorder prediction 201 223 - -
Vifa6g00058 240 MobiDBLite consensus disorder prediction 201 240 - -
Vifa6g00058 240 ProSitePatterns NF-YB/HAP3 subunit signature. 95 111 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vifa6g00058 240 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 64 128 IPR003958 -
Vifa6g00058 240 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Vifa6g00058 240 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Vifa6g00058 240 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Vifa6g00058 240 Gene3D Histone, subunit A 52 168 IPR009072 GO:0046982
Vifa6g00058 240 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 222 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00058 Vifa-Chr6 11312800 11316153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00058 5 195 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.085 3.06e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g00058 CBFD_NFYB_HMF 7.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00058 K08065 - gmx:100194424 279.256