Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00052 ATGTTCAACAACAACTACAGCACCGCCGGCATAAGCGAGATAGAGGAGGAAGAAGACACCATCAACCATCACCAGTACCTTGACACAATCGACAATGAAATTGAACAACAAGAAGAAGAAGACTCAATTTATGTTGCAGTTGGTAAGAGTGATACAAGCATGGAAGCTCTGTCATGGACACTCAATAACCTAACTACTCATTCCACCATCCTCTATCTCATCCATGTATTCCCCGAAATCAAACACATTCCACATCCATTAGGAGTAGGAATGATTGCAAGGAATCAAGTTAGTGCTGAGCAGGTAGAGATTTATATGGAGCAAGAAAGAAACAAGAGGAGACAACTCCTTCGCAAGTTCATCCAATCTTGCTCACTTTCCAAAGTTAAGGTTGATACCATCTTAATCGAGAGTGATTTCGTTGCAAAAGCCATCCTTGACTTAATTCCTATTCTTCAAATATCAAATTTAGTCATTGGAGCCAACAAATTCCATCTAAGAAAATCGAGATCAAAGAACGGAAATGGTGTGGCTGATCAGGTGGTACAGAAAGCACCACAAAGTTGTAAGGTTAGAATTATCTGCCAAGGTAAGGAAGTAAACGAGGAAATGATGATGATGACACCTTCTCCTAAGATAATTCCCACTACCAACTCTGCTAATAATGTGAATATAAAAGAAAATCATTCAGTTTTATGTGTTTGTTTCAAACCAAAGTTTAAATGA 726 0.3857 MFNNNYSTAGISEIEEEEDTINHHQYLDTIDNEIEQQEEEDSIYVAVGKSDTSMEALSWTLNNLTTHSTILYLIHVFPEIKHIPHPLGVGMIARNQVSAEQVEIYMEQERNKRRQLLRKFIQSCSLSKVKVDTILIESDFVAKAILDLIPILQISNLVIGANKFHLRKSRSKNGNGVADQVVQKAPQSCKVRIICQGKEVNEEMMMMTPSPKIIPTTNSANNVNIKENHSVLCVCFKPKFK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00052 241 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 4 241 - -
Vifa6g00052 241 Coils Coil 99 119 - -
Vifa6g00052 241 Pfam Universal stress protein family 42 188 IPR006016 -
Vifa6g00052 241 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 42 188 - -
Vifa6g00052 241 Gene3D HUPs 27 194 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00052 Vifa-Chr6 9840757 9841660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00052 42 198 Plant U-box Gene Family AT5G57035 30.189 1.14e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00052 - - lja:Lj4g3v0097300.1 303.138