Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00050 ATGTCTGATGATGAGTGTTTGCACTATGACAATGATGATGAATCCTCAAGTTATGGTTGCGGTTTGATTGGGTTCAAGAAAAACCAAGTGTTTGATTACAGTTTCAGCAGCAACATAGAAGAAGAAGATGATGATTTGTTTGAGATAAATTTGAAGAAGGAAGAACCATTAGGTGATGTTGTTTATGTGGCAGTTAGAATAGATGATCAAGGTTCAAGCATGGAAGCACTTTCATGGGCTTTGAAACACTCAGTTATACCTTCTATTACTACTATCTCTCTTCTACATGTTTTCCCTCAAATCAAACTAATTCCAAGTCCATTGGGGAAAATCCCAAGAAGTCATGTAAATCAAGAGCATGTCGACATCTACTTGGCCCAAGAGAAAAGCAAGAGGAGAATGTTGCTTCAAAAGTTCATTGACCTATGTAATGATTCAAAGGTTAAGGTGGAGGTGTTGCTTATTGAAAGTGACAACGTTGTTAAAACAATTGTGGATCTTGTTAAGAATCTAAATATAATGAAATTGGTGATTGGAACAACTACATCATCTAATCTAAGAAAACATGTGTCAAGAAGGAAAAATTCTATTGCGGAGATGGTGTTAAAAAGTGTAGAAGAAAAGTGTGATGTGAGAATCATATGTGAAGGAAGAGAAGTGATCGATCAGATGATTAATGGCTGCACTTCATCACAGCATCATGAAGTAGATGTTTTTGTTCGAGTCAAGCGTTTCATGTCCAATCCATTTTCGTTGTTTAGCTCTAGATATACTAATTCATAG 783 0.3589 MSDDECLHYDNDDESSSYGCGLIGFKKNQVFDYSFSSNIEEEDDDLFEINLKKEEPLGDVVYVAVRIDDQGSSMEALSWALKHSVIPSITTISLLHVFPQIKLIPSPLGKIPRSHVNQEHVDIYLAQEKSKRRMLLQKFIDLCNDSKVKVEVLLIESDNVVKTIVDLVKNLNIMKLVIGTTTSSNLRKHVSRRKNSIAEMVLKSVEEKCDVRIICEGREVIDQMINGCTSSQHHEVDVFVRVKRFMSNPFSLFSSRYTNS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00050 260 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 38 232 - -
Vifa6g00050 260 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 64 202 - -
Vifa6g00050 260 Gene3D HUPs 58 222 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00050 Vifa-Chr6 9781956 9783009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00050 73 217 U-box Gene Family AT2G45910 27.586 6.08e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00050 - - tpra:123908796 312.768