LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa6g00049	ATGATGGCAATAAATCGAAATATTGATGGCGAAGATGAGTTTTTGCACTTCTTTGATGAAGACATCGGCACAAGTTGTGTTTGGGGTTTCAGCAGCAGAATAGAAGAAGAAGATGATTATGTAGATTCAGAAGAGTTGTTTGAGATAAATCTGAAGAAGGAACCATTAGATACAATAAGAGAAGAAGATTGCGAGAGCAGTGTTTTCTCTATTGATATCCACAACAAGATAAAATCAAATGATGTTGTTTATGTGGCTGTTGGAGAAACTGGTTCAAGCATGGAAGCACTTTCATGGACCTTAAAACACTTGGTGAACCCTAGTTCTACTACTGTCTCTCTTGTACACGTTTTCCCTAAAGTCAAACAAATTCCCACTGCACTGGGAAAAATTCCAAGGAAATGTGTGAGTCAAGAACATGTTAACAACTACTTGAGCCAAGAGAAAATGAAGAGGAAAATACTCCTTCAAAAGTTCATTGACATGTGTACTGGCTCAAAAGTTAAGGTGGAGATGTTGCTTGTTGAAGGTAACAACATTGGAAAAGCCATTGTAGAGCTTGTTAAGAAAATAAATATAAGAAAATTAGTGATTGGAACTACACAATCTAATCTAAGAAAACATGTGTCAAGAAGGCAAAATTCTACCGCGGAGATGGTGTTAAAAAGTATAGAAGAAAGATGTGATGTTAAAATCATATGTGAAGGAAGAGAAGTGATCGATCAGATGATAAATGGATGTGCTTCTAAACGTGATGAAGTAGATGGTTTTGTTCCAATCAAGCAACGGAAACCATCTTGGTTATTTACGTCTAGATATGATTGGAATTGGAACTACACAATCTAG	846	0.3617	MMAINRNIDGEDEFLHFFDEDIGTSCVWGFSSRIEEEDDYVDSEELFEINLKKEPLDTIREEDCESSVFSIDIHNKIKSNDVVYVAVGETGSSMEALSWTLKHLVNPSSTTVSLVHVFPKVKQIPTALGKIPRKCVSQEHVNNYLSQEKMKRKILLQKFIDMCTGSKVKVEMLLVEGNNIGKAIVELVKKINIRKLVIGTTQSNLRKHVSRRQNSTAEMVLKSIEERCDVKIICEGREVIDQMINGCASKRDEVDGFVPIKQRKPSWLFTSRYDWNWNYTI	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa6g00049	281	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	40	250	-	-
	Vifa6g00049	281	Pfam	Universal stress protein family	81	222	IPR006016	-
	Vifa6g00049	281	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	85	225	-	-
	Vifa6g00049	281	Gene3D	HUPs	72	233	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa6g00049	Vifa-Chr6	9597563	9598574	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa6g00049	80	236	U-box Gene Family	AT2G45910	27.160	8.11e-13	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa6g00049	-		-	tpra:123908796	308.916