Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00047 ATGAAACGTTCCACCGACGATTCCACGGCGCCGATTCCCAAACCAGTTTTCCTCACCAAAGCCCAGCGTGAACAGCAAGCTATTGAACGCCGTCACATTCAAGTCACCGGTCATCGGCGCAATCAAGAAGAGCTTCTCCTTTCGAGTAACAACCGTCCCTCCGATCCAAAACCCTCCGATTCCGATCGACGAGATCGCGATTCAGATCGCAGAGACAGAGACAGAGATAGAGATAGGGATAGTTACAGAGACAGAGAAAGGGATAGGGATAGGGATAGAGATAGAGATAGAGATAGAGAACGTGATAGGGAAAGGGATAGGGATAGAGATAACAGAGATCGGGAACGGCGAAACCGCGATAAGGAACGTGAAGAAGAGAGTAAGGCTCGTGAGCGTGCTCGATTAGAGAAGCTAGCGGAACGAGAGAAAGAGAAAGAGCTTGAATCGATTAAGGAACAATACCTAGGTTCGAAAAAACCTAAAAAGAGGGTTATTAAACCTAGTGAGAAATTTCGATTTTCGTTTGATTGGGAAAATACTGAAGATACTTCGCGTGATATGAATTATCTTTACCAAAACCCTCATGAGGCTCAGCTTTTGTTTGGTCGAGGGTTTCGTGCTGGGATGGACCGTCGCGAGCAGAAGAAGCTTGCTGCCAAGAATGAGAAGGAGATGAGGGATCAGATCAGGAAGAAGGATGGAATTGAGGAGAAGCCTGAGGAGGCTGATGCGCAGAGGCGTAAAGAGGAGGCTGCTGATATGTATGACACGTTTGATATGAGGGTTGATCGTCATTGGAGTGAGAAGAAACTTGAAGAGATGACGGAGAGAGATTGGCGTATTTTTAGGGAGGATTATAATATCTCTTACAAAGGTTCAAAGATTCCTCGTCCTATGAGGAGTTGGGTTGAGAGCAAGTTGAGTCAAGAGCTTTTGAAGGCTGTGGAGAAAGCTGGTTACAAAACCCCTTCTCCAATTCAGATGGCTGCTATTCCCCTTGGTCTTCAGCAGCGTGATGTTATTGGTGTGGCTGAGACAGGTTCTGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATTAGTGAGGAGAATGAGGCCGAGGGTCCTTATGCTGTTGTTATGGCGCCAACTCGCGAGCTTGCTCAGCAGATTGAGGACGAGACTGTTAAATTTGCGCAGTATATGGGAATTAAAGTTGTTTCCATTGTTGGTGGTCAGTCTATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCTACCCCTGGTCGTTTGATTGATTGCTTGGAGCGTCGCTATGCGGTTCTCAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGATATGGGGTTTGAGCCACAAGTCATGGGTGTGCTTGATGCTATGCCATCTAGTAATTTGAAACCTGAGAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTATAGGACCACTTATATGTTTAGTGCCACTATGCCTCCTGCTGTGGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTGGTGACTATAGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATTTTATAAGCTTCAGAGATTGTTGGATGAGCTTAATGACAAAACCGCAATTGTGTTTGTCAACACCAAGAAGAGTGCTGATTTTCTTGCTAAGAATTTGGATAAGGAAGGCTATCGGGTGACCACTTTGCACGGAGGGAAATCACAGGAACAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTGGTTGCAACCGATGTTGCTGGACGTGGACGTACTGGCCGTGCGGGAAAGACTGGTGTGGCTACAACATTCTTGACTCTCCAGGACACTGATGTCTTTTATGACCTTAAGCAGATGCTCATTCAGAGTAATAGTGCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCTGACAGACCACCTAGGCGAAATGACACTGTTTTTGCCCATTAA 2085 0.4556 MKRSTDDSTAPIPKPVFLTKAQREQQAIERRHIQVTGHRRNQEELLLSSNNRPSDPKPSDSDRRDRDSDRRDRDRDRDRDSYRDRERDRDRDRDRDRDRERDRERDRDRDNRDRERRNRDKEREEESKARERARLEKLAEREKEKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNYLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMRDQIRKKDGIEEKPEEADAQRRKEEAADMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKSADFLAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSAVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00047 694 Gene3D - 261 530 IPR027417 -
Vifa6g00047 694 MobiDBLite consensus disorder prediction 41 55 - -
Vifa6g00047 694 Coils Coil 218 238 - -
Vifa6g00047 694 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 526 IPR014001 -
Vifa6g00047 694 MobiDBLite consensus disorder prediction 24 39 - -
Vifa6g00047 694 Coils Coil 105 148 - -
Vifa6g00047 694 SMART ultradead3 319 541 IPR014001 -
Vifa6g00047 694 Pfam DEAD/DEAH box helicase 325 515 IPR011545 GO:0003676|GO:0005524
Vifa6g00047 694 MobiDBLite consensus disorder prediction 56 159 - -
Vifa6g00047 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 647 IPR027417 -
Vifa6g00047 694 FunFam probable ATP-dependent RNA helicase DDX23 261 530 - -
Vifa6g00047 694 MobiDBLite consensus disorder prediction 666 694 - -
Vifa6g00047 694 CDD DEADc_DDX23 311 527 - -
Vifa6g00047 694 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Vifa6g00047 694 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 553 694 IPR001650 -
Vifa6g00047 694 Gene3D - 626 692 IPR027417 -
Vifa6g00047 694 Gene3D - 531 625 IPR027417 -
Vifa6g00047 694 Pfam Helicase conserved C-terminal domain 552 627 IPR001650 -
Vifa6g00047 694 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 300 328 IPR014014 GO:0003724
Vifa6g00047 694 CDD SF2_C_DEAD 538 641 - -
Vifa6g00047 694 SMART helicmild6 577 632 IPR001650 -
Vifa6g00047 694 MobiDBLite consensus disorder prediction 216 249 - -
Vifa6g00047 694 MobiDBLite consensus disorder prediction 669 694 - -
Vifa6g00047 694 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 239 626 - -
Vifa6g00047 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 528 IPR027417 -
Vifa6g00047 694 MobiDBLite consensus disorder prediction 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00047 Vifa-Chr6 9528760 9530922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00047 306 668 Eukaryotic Initiation Factors Gene Family AT1G72730 29.231 3.06e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00047 K12858 - gmx:100799264 1040.02