Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00025 ATGGCAATAGCAGGAGCAACCATAACCATGAGCTTGAGCAACAATAGTCACGAAGATGGAACTTGTAATTCCAACGATAACAATACAATTACTAAACCTACAACAACAACAACACCTCTAGTTGATGATGATCACGAGCATGACATGGTCATGCCAGGCTTTCGTTTCCATCCTACTGAAGAAGAACTTGTTGAATTCTACCTTCGCCGTAAGGTTGAGGGAAAACGTTTCAACGTTGAGCTTATCACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCGGCGATTGGAGAGAAGGAATGGTACTTTTATGTGCCTCGAGATCGAAAGTATAGAAACGGCGATCGTCCTAATCGTGTAACAACTTCTGGTTATTGGAAAGCTACCGGAGCTGATAGGATGATTAGAACTGAAAATTTTCGATCAATTGGACTCAAGAAAACCCTAGTTTTCTATTCTGGTAAAGCTCCTAAAGGTATAAGAACTAGTTGGATTATGAACGAGTATCGCTTACCACAACACGAAACCGAACGATATCAAAAGGGTGAGATATCGTTATGTCGTGTTTACAAGAGAGCTGGAGTAGAAGATCATCCTTCTCTCCCTCGTTGTCTTCCAATCACAAGACCTTCTTCGATTCCTTCCTCGTCGAGAACCTCACATTCTGAGAAGAATAAACAGAATGAAACATTGGGAATAGGATTTGTTGTTGGACAATCAGCAAAGATAGTTGATAATCATCAAATAGTTAACAAAATGGATGGAAACAATAATAGCAGTGGTGGTGATTGTAGTTCAGATCAAGTGACAACAGCTCTTGGTTTATCCAAATACAACAACAATACTACTTCAATTTACAGTACAGAAGAAGAGGAACAATTGATGATGATGCAACAACGACAACAACCTAGGCAATTAGTACAATTTGCAGGAGGAAACTCGTTGTTAGTTTCTGCTTGTGGTGGTGGTGGTGCTATTTTCCCTGTGTCAGCTACATCGGCGAGTTGTTCTAACAACGGTTCGAGTTCAACAAGTGCTGCAATGATGATGGATGATCTTAACAGGCTTGTGAGCTATCAGCAACAGCAATACTGCTACAATGTTCAAAACCATTCCAATCCGAATCCTAATCATTTGTCTACTTTGCTTATGCAACCAATGTCTCTACCAAATCAACTACCAACCACATTCCCAGACAGACTGTGGGACTGGAATCCAATTCCTGAAGATCATAATCATCCCAACAGTAACACCAGCAACTTCAAGTAA 1284 0.4065 MAIAGATITMSLSNNSHEDGTCNSNDNNTITKPTTTTTPLVDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSIPSSSRTSHSEKNKQNETLGIGFVVGQSAKIVDNHQIVNKMDGNNNSSGGDCSSDQVTTALGLSKYNNNTTSIYSTEEEEQLMMMQQRQQPRQLVQFAGGNSLLVSACGGGGAIFPVSATSASCSNNGSSSTSAAMMMDDLNRLVSYQQQQYCYNVQNHSNPNPNHLSTLLMQPMSLPNQLPTTFPDRLWDWNPIPEDHNHPNSNTSNFK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00025 427 Gene3D NAC domain 59 200 IPR036093 GO:0003677|GO:0006355
Vifa6g00025 427 MobiDBLite consensus disorder prediction 214 233 - -
Vifa6g00025 427 MobiDBLite consensus disorder prediction 14 38 - -
Vifa6g00025 427 SUPERFAMILY NAC domain 50 196 IPR036093 GO:0003677|GO:0006355
Vifa6g00025 427 FunFam NAC domain-containing protein 35 59 200 - -
Vifa6g00025 427 MobiDBLite consensus disorder prediction 205 233 - -
Vifa6g00025 427 ProSiteProfiles NAC domain profile. 50 197 IPR003441 GO:0003677|GO:0006355
Vifa6g00025 427 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 47 320 - -
Vifa6g00025 427 MobiDBLite consensus disorder prediction 14 44 - -
Vifa6g00025 427 Pfam No apical meristem (NAM) protein 52 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00025 Vifa-Chr6 4652944 4655007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00025 49 210 NAC Transcription Factor Family AT2G02450 91.975 9.44e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g00025 NAM 4.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00025 - - tpra:123910806 562.762