Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00023 ATGGAAGGAATAGGTCACCCAGTACCTCGAACTGTTGAAGAAGTTTTCAGCGATTTTAAGGGTAGACGCGCTGGGTTGATCAAAGCCCTAACCACCGACGTTGAAAAGTTTTACCAGCTCTGCGATCCTGATAAAGAGAATTTGTGCTTATATGGATATCCAAATGAAACATGGGAAGTTAATTTGCCTGTTGAAGAAGTGCCTCCCGAACTTCCAGAGCCAGCGTTAGGTATTAACTTTGCTAGGGATGGCATGCAAGAGAAGGACTGGTTATCACTTGTTGCAGCTCACAGTGACTCGTGGCTGCTTGCTGTTGCGTTCTATTTCGGTGCTCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGAACTGCCAACTATCTTTGAGCTCGCTACAGGAACTACTAAGCAATCAAAGGACCAAACGCCTGCTCACACCAATGGTAGCAATAGCAAATTCAAATCAAGTGGAAAGTCCCGCCAGTCTGAGTCTCAGACCAAGAGTGTGAAGATGTCTGCACCACCCAAAGAAGAGGATGACAGTGGAGAAGAAGAAGACGATGACGATGAAGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTCTGGATTTGTTGTGATATGTGCGAGAGATGGTTCCATGGTAAATGTGTTAAGATTACTCCAGCTAAGGCTGAACACATCAAGCAATACAAGTGCCCCGGCTGCAGTACCAAGAAGCCAAGAATTGCATAG 777 0.4466 MEGIGHPVPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQLCDPDKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAAHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFELATGTTKQSKDQTPAHTNGSNSKFKSSGKSRQSESQTKSVKMSAPPKEEDDSGEEEDDDDEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPGCSTKKPRIA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00023 258 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Vifa6g00023 258 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Vifa6g00023 258 CDD PHD_AL_plant 204 253 IPR044104 -
Vifa6g00023 258 PANTHER CPG BINDING PROTEIN 9 256 IPR045104 GO:0006355|GO:0042393
Vifa6g00023 258 SMART PHD_3 203 251 IPR001965 -
Vifa6g00023 258 MobiDBLite consensus disorder prediction 139 201 - -
Vifa6g00023 258 Pfam Alfin 11 137 IPR021998 GO:0006355|GO:0042393
Vifa6g00023 258 MobiDBLite consensus disorder prediction 139 177 - -
Vifa6g00023 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 252 IPR013083 -
Vifa6g00023 258 SUPERFAMILY FYVE/PHD zinc finger 192 255 IPR011011 -
Vifa6g00023 258 MobiDBLite consensus disorder prediction 184 201 - -
Vifa6g00023 258 FunFam PHD finger alfin-like protein 196 252 - -
Vifa6g00023 258 Pfam PHD-finger 204 252 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00023 Vifa-Chr6 4025462 4028916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00023 1 254 Alfin-like Transcription Factor Family AT1G14510 78.740 1.41e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vifa6g00023 Alfin 8.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00023 K26274 - gmx:100807826 436.417