Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00022 ATGAATGATCCAAGTAATCTTCATTTGAAGAAGGAGCTTACTCAAATTCGAAAAGCTGCTCGTGTTTTGAGGGATCCAGGTACTAGTTGTTCATGGAAATCCACCTCGAGATCTGTTCCTGCTGCTTCTGCTAATCCTCCATTGAAGACGCATCTCAATTCTTCTCATGCTTCTGCTAATCCGACGCGTCTCAATTCTTCTCATGCTTCTGCTAATGGTAGCAAGACTGTTTTCTTGTATAACTGGAATAACTCTAAATCCATCAAAGACGATGAACAAGAACAACGCCGCGTTACAGAAGATGAAGACGGTTCTTCCTCTCTACTTGGAAGTTTGAGCGATGCGCGCAACGGTTGTGATTCAAAGAGTGATTGTGGGACCCGTCGAAATACGAATTCCAGAAGAATGGTTCCTCTTCATGTTAATAAGAAGAAAAAGAGTAAGAAAAATCGTTATTCTCTGTCTCCATTGGTTAATAATAATGATGATTCTGATGATTATTGTAACTCTTTTTCTGGTGCTTCTTCGCTTCTTCTTAAGCTTAAGACTAAGAATAAGTTTGTTACAAGGACTAGTTTGAAAGAGGATGATTCTTATTCCTACAGTACTCCTGCATTGTCCACGAGCTCTTTTAATAGGTATCTTCGTCGTTATCCTAGTACTGTTGGATCGTATACCACTTCTATGAATGATGGGGATGATGAAATTGATGAGGGTTTGGATCTTCCGGGGACTCGGGGGTGTGGGATTCCGTGTTATTGGTCCAAGAGGACGCCCAAGCATAGAGGGGGGTGTGGGAGTTGTTGTTCACCTTCCTTTTCGGATACTTTGAGGAGGAAGGGTAGTAGTATGTTGTGTGGAAGTCAGTCTATGTACTCCAGACACCGGAGATCGCATTCTTCGACTTCGCTGACGCAGAAGCGGAGAATGTATTTGAGGAATGGCCGTGGTGGAGGAGGAGGAGGTGTTGTTCCTTTGCTTAATAGCACTAGTAGTGGTGATGTGAGGCAGTGTTCGTCGTCTATTGGTATTGGTAGGAGTAGGACGGATGATGAACTTTCTAGTAACTTTGGTGAGCTTGATCTTGAGGGATTGAGTAGACTTGATGGAAGAAGGTGGTCGTCAAGTTGTAGGAGTCAAGAGGGTCTGGAGATTGTTCCTATCAATGGAGGGGATGAAGAAGGCTCCTCCGAAAACGGTAGAAGTTTCAGCCACAAGTATAAGCCTTTGTTCTTTGGTGAACTCATTGGGCAGAATATTGTGGTTCACTCGCTCATCAATGCTGTTTCCAGAGGCAGAATTGCTCCTGTCTATCTTTTTCAGGGTCCTCGTGGGACTGGCAAAACATCTACTGCTAGGATATTTGCCACTTCCTTGAATTGTGTGGCTTCTGTTGAAGGTAAGCCTTGTGGTTACTGCGGGGAATGTGCTGATTTCATTTCTGGTAAGAGCAGTGATCTGGTGGAGGTCGACGGGTCTAATAAGAAAGGAATTGATAGAGCTAGATATCTGCTGAAAAGATTGTCGGTTGGGTCTTCTTCGGCGGCGTCCTCGCGATATACAGTTTTTGTTATTGATGAATGTCACTTGTTAACCTCCAAGACATGGCTTGGATTTCTCAAGTTTCTCGAAGGACCCCCTCAGCATGTTGTGTTCATATTTATAACATCTGATATTGACAATGTGCCAAGAACAATACAGTCTCGATGTCAGAAGTACCTTTTCAATAAAATTAAAGACGGGGATATTGTGACAAGGTTAAGGAAAATATCTACTCAGGAGAACCTCGACGTCGACACCGATGCCCTGGATCTTATTGCCATGAATGCAGACGGTTCACTTCGAGATGCTGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAATTAGCAATGTCATCAGACACTGCAGAAACTGTGAAAAGGTCCAGAGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAGCTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATGCGGTCGTTGACACCAAACCCGACGGTTCATTCTTTGGTGGTCGGAGTTTGAATGAAGTGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTCTACAACTTGGTTCCGTACCTTCTTCGGATATTACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTACAAGACAACGGAAGATGAACCATCAAGTGCTTCAAGAGACTTTACTTCTTTCAAGCACAAGTCAGGCCTCCAATATATGTCTCAAAAATCAACACCCACTGCTTCCCATCAAAAAGCAGTAAATGGCAGTTCCGGCCTTCAAATTGATGGTTTCGGCTTGAAATCAAAGCCGTCAAATAGCCCGGTTATAAATGATGGCTCCACAGTGGTCTCGTCTGATGATCTTATAGTTGGGAATACAATGTTTAGATGCATAGATTCAGAGAAGTTATGTGACATATGGGCGTGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGACACCTGCTACAAGATTACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGAAGATATTAAACTCAGGGTTGAAAGGTTTTTAAGCAGCATTACAAACTCCTTGGAGATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGACGGTGAAGGTGAAAATCACGCTAAATTGCCAGGTCTAAAGCAGGCTGCGTCACCACTGGCAAGTGAGGACGAACAAAGGCGAGACCATATGAATGGAAACGTGTCATATTCAAGTTTGCATCAATCTGCCCTAGGTTCATCAGATATTTTGACCGAAGGAAATGGTGTGAAGGATAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGCCTGAGACCTGAGAAGAATCAAGTCCTGCCTCAGGATGGAGCTTATTGTGTAAGCTCAATGGAGTCCATGGATTCGTTAAGATTTTCCTCTCAACAGCATAGAGAAGATGGCACAAATAGTGATCTTAAAATTTTGGGCCTAAAAAATGGAAGGGTCCTACCGAAGGATCAGATCGGGAAAAGGACCGACAGTCATCCAATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAACAATGTCTGGAAAAGATAACCCGGGTTATGAATCGGGTTCGGGAGGTAGAGGTTGTGGATTTTTATGTTGGAATAGAAAGTCCAACTCTAAAAAGACAGGGAAGATAAAAGGCACCCCAGTTGGAGGATCGCGTAAAGTCGGGCGTTCCTCAGTGCTTGGTGAGTATGGAAAGCGAAAGAGAAATGAGCGGAAAAGATAA 3540 0.4353 MNDPSNLHLKKELTQIRKAARVLRDPGTSCSWKSTSRSVPAASANPPLKTHLNSSHASANPTRLNSSHASANGSKTVFLYNWNNSKSIKDDEQEQRRVTEDEDGSSSLLGSLSDARNGCDSKSDCGTRRNTNSRRMVPLHVNKKKKSKKNRYSLSPLVNNNDDSDDYCNSFSGASSLLLKLKTKNKFVTRTSLKEDDSYSYSTPALSTSSFNRYLRRYPSTVGSYTTSMNDGDDEIDEGLDLPGTRGCGIPCYWSKRTPKHRGGCGSCCSPSFSDTLRRKGSSMLCGSQSMYSRHRRSHSSTSLTQKRRMYLRNGRGGGGGGVVPLLNSTSSGDVRQCSSSIGIGRSRTDDELSSNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPINGGDEEGSSENGRSFSHKYKPLFFGELIGQNIVVHSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFATSLNCVASVEGKPCGYCGECADFISGKSSDLVEVDGSNKKGIDRARYLLKRLSVGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEGPPQHVVFIFITSDIDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVDTDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNEVELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDITQSSSSRRQSYKTTEDEPSSASRDFTSFKHKSGLQYMSQKSTPTASHQKAVNGSSGLQIDGFGLKSKPSNSPVINDGSTVVSSDDLIVGNTMFRCIDSEKLCDIWACCIERCHSKTLRHLLQDYGKLVSISEVQGVLVAYVAFGDEDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGENHAKLPGLKQAASPLASEDEQRRDHMNGNVSYSSLHQSALGSSDILTEGNGVKDRRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGAYCVSSMESMDSLRFSSQQHREDGTNSDLKILGLKNGRVLPKDQIGKRTDSHPMSPSILHDSSLATMSGKDNPGYESGSGGRGCGFLCWNRKSNSKKTGKIKGTPVGGSRKVGRSSVLGEYGKRKRNERKR 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 1140 1179 - -
Vifa6g00022 1179 Pfam DNA polymerase III subunits gamma and tau domain III 632 752 IPR022754 GO:0003887
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 89 157 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 89 103 - -
Vifa6g00022 1179 Pfam DNA polymerase III, delta subunit 417 578 - -
Vifa6g00022 1179 CDD AAA 416 575 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 28 70 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 1092 1128 - -
Vifa6g00022 1179 CDD HLD_clamp_pol_III_gamma_tau 578 641 IPR045085 -
Vifa6g00022 1179 SUPERFAMILY post-AAA+ oligomerization domain-like 649 750 IPR008921 GO:0003677|GO:0006260
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 770 784 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 1103 1121 - -
Vifa6g00022 1179 Gene3D - 393 576 IPR027417 -
Vifa6g00022 1179 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 405 808 - -
Vifa6g00022 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 625 IPR027417 -
Vifa6g00022 1179 Coils Coil 714 741 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 756 785 - -
Vifa6g00022 1179 FunFam DNA polymerase III subunit gamma/tau 579 641 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 104 120 - -
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 947 973 - -
Vifa6g00022 1179 Gene3D - 580 641 - -
Vifa6g00022 1179 SMART AAA_5 434 585 IPR003593 GO:0016887
Vifa6g00022 1179 MobiDBLite consensus disorder prediction 24 70 - -
Vifa6g00022 1179 NCBIfam DNA polymerase III subunit gamma/tau 402 752 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00022 Vifa-Chr6 3306281 3311320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00022 398 693 Core DNA Replication Machinery Family AT1G21690 25.329 4.71e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00022 - - gmx:100791561 1461.05