Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00021 ATGAATGATCCAAGTAATCTTCATTTGAAGAAGGAGCTTACTCAAATTCGAAAAGCTGCTCGTGTTTTGAGGGATCCAGGTACTAGTTGTTCATGGAAATCCACCTCGAGATCTGTTCCTGCTGCTTCTGCTAATCCTCCATTGAAGACGCATCTCAATTCTTCTCATGCTTCTGCTAATCCGACGCGTCTCAATTCTTCTCATGCTTCTGCTAATGGTAGCAAGACTGTTTTCTTGTATAACTGGAATAACTCTAAATCCATCAAAGACGATGAACAAGAACAACGCCGCGTTACAGAAGATGAAGACGGTTCTTCCTCTCTACTTGGAAGTTTGAGCGATGCGCGCAACGGTTGTGATTCAAAGAGTGATTGTGGGACCCGTCGAAATACGAATTCCAGAAGAATGGTTCCTCTTCATGTTAATAAGAAGAAAAAGAGTAAGAAAAATCGTTATTCTCTGTCTCCATTGGTTAATAATAATGATGATTCTGATGATTATTGTAACTCTTTTTCTGGTGCTTCTTCGCTTCTTCTTAAGCTTAAGACTAAGAATAAGTTTGTTACAAGGACTAGTTTGAAAGAGGATGATTCTTATTCCTACAGTACTCCTGCATTGTCCACGAGCTCTTTTAATAGGTATCTTCGTCGTTATCCTAGTACTGTTGGATCGTATACCACTTCTATGAATGATGGGGATGATGAAATTGATGAGGGTTTGGATCTTCCGGGGACTCGGGGGTGTGGGATTCCGTGTTATTGGTCCAAGAGGACGCCCAAGCATAGAGGGGGGTGTGGGAGTTGTTGTTCACCTTCCTTTTCGGATACTTTGAGGAGGAAGGGTAGTAGTATGTTGTGTGGAAGTCAGTCTATGTACTCCAGACACCGGAGATCGCATTCTTCGACTTCGCTGACGCAGAAGCGGAGAATGTATTTGAGGAATGGCCGTGGTGGAGGAGGAGGAGGTGTTGTTCCTTTGCTTAATAGCACTAGTAGTGGTGATGTGAGGCAGTGTTCGTCGTCTATTGGTATTGGTAGGAGTAGGACGGATGATGAACTTTCTAGTAACTTTGGTGAGCTTGATCTTGAGGGATTGAGTAGACTTGATGGAAGAAGGTGGTCGTCAAGTTGTAGGAGTCAAGAGGGTCTGGAGATTGTTCCTATCAATGGAGGGGATGAAGAAGGCTCCTCCGAAAACGGTAGAAGTTTCAGCCACAAGTATAAGCCTTTGTTCTTTGGTGAACTCATTGGGCAGAATATTGTGGTTCACTCGCTCATCAATGCTGTTTCCAGAGGCAGAATTGCTCCTGTCTATCTTTTTCAGGGTCCTCGTGGGACTGGCAAAACATCTACTGCTAGGATATTTGCCACTTCCTTGAATTGTGTGGCTTCTGTTGAAGGTAAGCCTTGTGGTTACTGCGGGGAATGTGCTGATTTCATTTCTGGTAAGAGCAGTGATCTGGTGGAGGTCGACGGGTCTAATAAGAAAGGAATTGATAGAGCTAGATATCTGCTGAAAAGATTGTCGGTTGGGTCTTCTTCGGCGGCGTCCTCGCGATATACAGTTTTTGTTATTGATGAATGTCACTTGTTAACCTCCAAGACATGGCTTGGATTTCTCAAGTTTCTCGAAGGACCCCCTCAGCATGTTGTGTTCATATTTATAACATCTGATATTGACAATGTGCCAAGAACAATACAGTCTCGATGTCAGAAGTACCTTTTCAATAAAATTAAAGACGGGGATATTGTGACAAGGTTAAGGAAAATATCTACTCAGGAGAACCTCGACGTCGACACCGATGCCCTGGATCTTATTGCCATGAATGCAGACGGTTCACTTCGAGATGCTGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAATTAGCAATGTCATCAGACACTGCAGAAACTGTGAAAAGGTCCAGAGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAGCTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATGCGGTCGTTGACACCAAACCCGACGGTTCATTCTTTGGTGGTCGGAGTTTGAATGAAGTGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTCTACAACTTGGTTCCGTACCTTCTTCGGATATTACTCAGTCAAGCAGCAGCAGGAGGCAGAGCTACAAGACAACGGAAGATGAACCATCAAGTGCTTCAAGAGACTTTACTTCTTTCAAGCACAAGTCAGGCCTCCAATATATGTCTCAAAAATCAACACCCACTGCTTCCCATCAAAAAGCAGTAAATGGCAGTTCCGGCCTTCAAATTGATGGTTTCGGCTTGAAATCAAAGCCGTCAAATAGCCCGGTTATAAATGATGGCTCCACAGTGGTCTCGTCTGATGATCTTATAGTTGGGAATACAATGTTTAGATGCATAGATTCAGAGAAGTTATGTGACATATGGGCGTGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGACACCTGCTACAAGATTACGGAAAGCTTGTGTCCATATCTGAAGTTCAAGCAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGAAGATATTAAACTCAGGGTTGAAAGGTTTTTAAGCAGCATTACAAACTCCTTGGAGATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGACGGTGAAGGTGAAAATCACGCTAAATTGCCAGGTCTAAAGCAGGCTGCGTCACCACTGGCAAGTGAGGACGAACAAAGGCGAGACCATATGAATGGAAACGTGTCATATTCAAGTTTGCATCAATCTGCCCTAGGTTCATCAGATATTTTGACCGAAGGAAATGGTGTGAAGGATAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGCCTGAGACCTGAGAAGAATCAAGTCCTGCCTCAGGATGGAGCTTATTGTGTAAGCTCAATGGAGTCCATGGATTCGTTAAGATTTTCCTCTCAACAGCATAGAGAAGATGGCACAAATAGTGATCTTAAAATTTTGGGCCTAAAAAATGGAAGGGTCCTACCGAAGGATCAGATCGGGAAAAGGACCGACAGTCATCCAATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAACAATGTCTGGAAAAGATAACCCGGGTTATGAATCGGGTTCGGGAGGTAGAGGTTGTGGATTTTTATGTTGGAATAGAAAGTCCAACTCTAAAAAGACAGGGAAGATAAAAGGCACCCCAGTTGGAGGATCGCGTAAAGTCGGGCGTTCCTCAGTGCTTGGTGAGTATGGAAAGCGAAAGAGAAATGAGCGGAAAAGATAA 3543 0.4355 MNDPSNLHLKKELTQIRKAARVLRDPGTSCSWKSTSRSVPAASANPPLKTHLNSSHASANPTRLNSSHASANGSKTVFLYNWNNSKSIKDDEQEQRRVTEDEDGSSSLLGSLSDARNGCDSKSDCGTRRNTNSRRMVPLHVNKKKKSKKNRYSLSPLVNNNDDSDDYCNSFSGASSLLLKLKTKNKFVTRTSLKEDDSYSYSTPALSTSSFNRYLRRYPSTVGSYTTSMNDGDDEIDEGLDLPGTRGCGIPCYWSKRTPKHRGGCGSCCSPSFSDTLRRKGSSMLCGSQSMYSRHRRSHSSTSLTQKRRMYLRNGRGGGGGGVVPLLNSTSSGDVRQCSSSIGIGRSRTDDELSSNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPINGGDEEGSSENGRSFSHKYKPLFFGELIGQNIVVHSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFATSLNCVASVEGKPCGYCGECADFISGKSSDLVEVDGSNKKGIDRARYLLKRLSVGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEGPPQHVVFIFITSDIDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVDTDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNEVELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDITQSSSSRRQSYKTTEDEPSSASRDFTSFKHKSGLQYMSQKSTPTASHQKAVNGSSGLQIDGFGLKSKPSNSPVINDGSTVVSSDDLIVGNTMFRCIDSEKLCDIWACCIERCHSKTLRHLLQDYGKLVSISEVQAGVLVAYVAFGDEDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGENHAKLPGLKQAASPLASEDEQRRDHMNGNVSYSSLHQSALGSSDILTEGNGVKDRRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGAYCVSSMESMDSLRFSSQQHREDGTNSDLKILGLKNGRVLPKDQIGKRTDSHPMSPSILHDSSLATMSGKDNPGYESGSGGRGCGFLCWNRKSNSKKTGKIKGTPVGGSRKVGRSSVLGEYGKRKRNERKR 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00021 1180 Pfam DNA polymerase III subunits gamma and tau domain III 632 752 IPR022754 GO:0003887
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 89 157 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 89 103 - -
Vifa6g00021 1180 Pfam DNA polymerase III, delta subunit 417 578 - -
Vifa6g00021 1180 CDD AAA 416 575 - -
Vifa6g00021 1180 Coils Coil 1173 1180 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 28 70 - -
Vifa6g00021 1180 CDD HLD_clamp_pol_III_gamma_tau 578 641 IPR045085 -
Vifa6g00021 1180 SUPERFAMILY post-AAA+ oligomerization domain-like 649 750 IPR008921 GO:0003677|GO:0006260
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 770 784 - -
Vifa6g00021 1180 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 405 810 - -
Vifa6g00021 1180 Gene3D - 393 576 IPR027417 -
Vifa6g00021 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 625 IPR027417 -
Vifa6g00021 1180 Coils Coil 714 741 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 948 974 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 756 785 - -
Vifa6g00021 1180 FunFam DNA polymerase III subunit gamma/tau 579 641 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 1104 1122 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 104 120 - -
Vifa6g00021 1180 Gene3D - 580 641 - -
Vifa6g00021 1180 SMART AAA_5 434 585 IPR003593 GO:0016887
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 24 70 - -
Vifa6g00021 1180 MobiDBLite consensus disorder prediction 1093 1180 - -
Vifa6g00021 1180 NCBIfam DNA polymerase III subunit gamma/tau 402 752 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00021 Vifa-Chr6 3306281 3311320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00021 398 693 Core DNA Replication Machinery Family AT1G21690 25.329 4.27e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00021 - - gmx:100791561 1456.43