Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00017 ATGGAACTTTCTAGCAGCCAGGATGGTGAAATCCAAATCCCAACTAATAATTATGTTGCTACTGGTGTTACTAGTAACGGACATGGTCATCATCATCATCATCATCACCACCATCCTCCTCCTCCTCCACCACCACCTCTCCTACACCACAGCCACAATAACATCATAACATCTTCCTCAGCCGCACTAGTACCTCAGAGTCAGAACCCTTCAGTTAATGGCACAACCACAAACTCTACTGGTGTAGAACTAGATCTTGATCAATCCTCCTACAAGAAACCGTTATCACAAGTGGTGGTCAAGTACAGAGAATGCTTGAAAAACCATGCAGCTGCAATGGGAGGAAATGCTACAGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTTCCATAGAAGCACTCAACTGTTCGGCTTGCCATTGTCACAGAAACTTCCATAGAAAGGAAATTGAAGGTGAAACTGATGAAGAAAACTACCAACATCACCATAACTCACCTTTCACCTTCAACTTCAACAGACAACAACAACAACAACATCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAACCTCTCGGGCTTGGCTACCACCACCCTCACACTACTCCTAACTCTACATCAGCAGCAGTAACAGGTAACAACAACAATATTCTTCCTTCTAGAGCTGTAGCAGCACCACCACATGGACATGGACACATCATTATGCCTTTCAACTACAACATACCTTCTGAATCTGATGAGCAAGAAGAACATGGTAGAACGCAGAGTCAGCATCAACAGGTAGTGATGAAGAAAAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGAGAAAATGCTGAACTTTGCTGAGAAAGTTGGATGGAAATTTCAGAAACAGGAAGAGTCTCTAGTGCAACAGTTCTGTGCGGAGATTGGAGTGAAGAGAAGAGTGCTAAAGGTTTGGATGCATAACAATAAGCATAATCTTGCAAAAAAACAACATATTGATATTACCACTCATCATCTTCCAACTCCTTAA 1032 0.4273 MELSSSQDGEIQIPTNNYVATGVTSNGHGHHHHHHHHHPPPPPPPPLLHHSHNNIITSSSAALVPQSQNPSVNGTTTNSTGVELDLDQSSYKKPLSQVVVKYRECLKNHAAAMGGNATDGCGEFMPSGEQGSIEALNCSACHCHRNFHRKEIEGETDEENYQHHHNSPFTFNFNRQQQQQHHSMRKFMLPLPDQPLGLGYHHPHTTPNSTSAAVTGNNNNILPSRAVAAPPHGHGHIIMPFNYNIPSESDEQEEHGRTQSQHQQVVMKKRFRTKFTQEQKEKMLNFAEKVGWKFQKQEESLVQQFCAEIGVKRRVLKVWMHNNKHNLAKKQHIDITTHHLPTP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00017 343 Gene3D - 251 330 - -
Vifa6g00017 343 Pfam ZF-HD protein dimerisation region 100 152 IPR006456 -
Vifa6g00017 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 102 151 IPR006456 -
Vifa6g00017 343 MobiDBLite consensus disorder prediction 19 52 - -
Vifa6g00017 343 NCBIfam homeobox domain, ZF-HD class 268 324 IPR006455 -
Vifa6g00017 343 SUPERFAMILY Homeodomain-like 258 329 IPR009057 -
Vifa6g00017 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 71 327 - -
Vifa6g00017 343 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 101 152 IPR006456 -
Vifa6g00017 343 FunFam Zinc-finger homeodomain protein 2 255 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00017 Vifa-Chr6 2099129 2100160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00017 54 330 ZF-HD Transcription Factor Family AT2G02540 46.316 2.46e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa6g00017 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00017 - - tpra:123910799 462.611