Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00007 ATGAGAACAATATACACTCAAGGACCAAACCTTATCAATTTACCATTTTGCCACTGTTTGCAATCCCTCTCTCCAAACCCAAATGTTCCATTCCTCGTTCCTTCCACGCATACTAGAAAGCTAACTCCAAAACCTTTTTCCATTTCCTTCAAAAACTCTCTCTTTTCACCAATTCAAGCTTCTTCCATGGCTTCATCCACTGTCACAGACACTCAGAAACCATTCTCCGTTCTCTTTGTGTGTCTTGGCAACATCTGTAGAAGCCCAGCTGCTGAAGGGGTTTTCACTGACTTGGTTAAGAAAAGGGGTTTTGATTCAAAGTTCAGAATCGATTCTGCTGGTACGATCAATTATCATGAGGGTAATGAAGCTGACCCGAGAATGAGAGCTGCATCAAAGAGACGTGGGATTCAGATAACTTCACTTTCACGGCCAATTAAGTCATCTGATTTTGTTGAATTTGATCTTATTCTTGCTATGGACAAGCAAAACAAAGAGGACATATTGGAAGCTTTTAATAGATGGAAATTTAGAGATCCTATACCTAAAGATGCCCACAAAAAGGTTAAGTTGATGTGCTCATATTGCAAGAAGAACAGTGAAACTGAAGTCCCAGATCCTTACTATGGCGGACCTCAAGGCTTTGAGAAGGTGTTAGATTTGCTCGAAGATGCTTGTGAATCATTGCTGGATAACATTTTGGCAGAAAATAAACATATACAAGAATCCTAA 732 0.3975 MRTIYTQGPNLINLPFCHCLQSLSPNPNVPFLVPSTHTRKLTPKPFSISFKNSLFSPIQASSMASSTVTDTQKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGFDSKFRIDSAGTINYHEGNEADPRMRAASKRRGIQITSLSRPIKSSDFVEFDLILAMDKQNKEDILEAFNRWKFRDPIPKDAHKKVKLMCSYCKKNSETEVPDPYYGGPQGFEKVLDLLEDACESLLDNILAENKHIQES 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00007 243 SMART LMWPc_2 75 232 IPR023485 -
Vifa6g00007 243 PRINTS LMW phosphotyrosine protein phosphatase signature 77 94 IPR017867 GO:0004725|GO:0006470
Vifa6g00007 243 PRINTS LMW phosphotyrosine protein phosphatase signature 204 219 IPR017867 GO:0004725|GO:0006470
Vifa6g00007 243 PRINTS LMW phosphotyrosine protein phosphatase signature 120 136 IPR017867 GO:0004725|GO:0006470
Vifa6g00007 243 Gene3D - 71 242 - -
Vifa6g00007 243 SUPERFAMILY Phosphotyrosine protein phosphatases I 73 233 IPR036196 -
Vifa6g00007 243 CDD LMWPTP 76 231 - -
Vifa6g00007 243 Pfam Low molecular weight phosphotyrosine protein phosphatase 77 230 IPR023485 -
Vifa6g00007 243 FunFam Low molecular weight protein-tyrosine-phosphatase 74 238 - -
Vifa6g00007 243 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 14 238 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00007 22 237 Protein tyrosine phosphatase (PTP) family AT3G44620 59.766 8.05e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00007 K25307 - gmx:100797254 342.428