Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00004 ATGGCGACGGAGAACACCGTAACATCAAACCCTAGCCACAGAGAGCGACCAAAAGTGGTGGTTATAACCGGCCCAACCGCTTCCGGAAAGTCAAAACTAGCCGTCGATTTGGCCTCCCACTTCCCCCTCGAAGTAATCAACGCCGATTCCATGCAAGTCTACACCGGCCTCGACATTCTCACCAACAAGCTCCCCTTCTCCGAGCAAAACGGAGTACCGCACCATCTATTAGGTACTGTTAACCCAAACACTGAATTCACTGCCAAAGCTTTTCGTGATTCGGCCATTCCTATCATTGATGCCATATTGTCTAGAAATCACTTACCAGTTATAGTTGGCGGTACTAATTATTATATACAGGCTCTTGTGACTTTGTTTCTGTTAGATGATTCCACAGATGAGTTGAATGAAAGCAATTTAGGTGACTCACCGGGTATCGCAGGGTGTGATAATAGTATTGCGGCTGAAAACGACTGTTCTGGCTACAGTTATGACTTGCTTAAAGATATTGACCCAGTTGCAGCAAATAGAATCCATCCAAATAACCTAAGAAAGATAAACCAATACATTAGTTTGTACTCTCGTACCGGTGTTCTTCCCAGTAAAGTCTTTCAAGGACAGGCAGCAGAGAAGTGGGGCCAAGCTGATAACTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCATCTCTCCCAGTATTGGACAGATATGTGGAGCAAAGGGTAGATCACATGATGGATGCAGGATTACTCAATGAAGTCTATAACATTTACTCTATGAATGCAGATTATACCAGAGGTTTGCGACAAGCCATTGGTGTCCGTGAATTTGAGCATCTTCTTCAAACCTGTGTTTTGAATAACATAAATGAGAAAGCGAAGGAGTTAACTGATGGAGTGAGCTTAGAAAATGGCGAGCCAGTGCTTGATGGAAATTTAATGGAGTGGTTTAGATCTTCCTCTGATACTAAATCCACATATCTTTTGGAAGAAGCAATCGAGAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGTCAGAAGAGGATGCTGAGTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACGGAATCAATATCGAATCAAATGATGTATGGAATAGCCAAGTGGTTGAAACTGCGATGA 1161 0.4264 MATENTVTSNPSHRERPKVVVITGPTASGKSKLAVDLASHFPLEVINADSMQVYTGLDILTNKLPFSEQNGVPHHLLGTVNPNTEFTAKAFRDSAIPIIDAILSRNHLPVIVGGTNYYIQALVTLFLLDDSTDELNESNLGDSPGIAGCDNSIAAENDCSGYSYDLLKDIDPVAANRIHPNNLRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASLPVLDRYVEQRVDHMMDAGLLNEVYNIYSMNADYTRGLRQAIGVREFEHLLQTCVLNNINEKAKELTDGVSLENGEPVLDGNLMEWFRSSSDTKSTYLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWDIHYVDSTESISNQMMYGIAKWLKLR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00004 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
Vifa6g00004 386 Hamap tRNA dimethylallyltransferase [miaA]. 19 376 IPR018022 GO:0008033
Vifa6g00004 386 Gene3D - 151 208 - -
Vifa6g00004 386 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 293 IPR018022 GO:0008033
Vifa6g00004 386 Gene3D - 17 384 IPR027417 -
Vifa6g00004 386 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 372 IPR039657 -
Vifa6g00004 386 Pfam IPP transferase 52 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00004 Vifa-Chr6 812282 814574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00004 22 371 C2H2 Transcription Factor Family AT2G27760 58.380 1.34e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00004 K00791 - gmx:100792690 583.563