Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00003 ATGGCGACGGAGAACACCGTAACATCAAACCCTAGCCACAGAGAGCGACCAAAAGTGGTGGTTATAACCGGCCCAACCGCTTCCGGAAAGTCAAAACTAGCCGTCGATTTGGCCTCCCACTTCCCCCTCGAAGTAATCAACGCCGATTCCATGCAAGTCTACACCGGCCTCGACATTCTCACCAACAAGCTCCCCTTCTCCGAGCAAAACGGAGTACCGCACCATCTATTAGGTACTGTTAACCCAAACACTGAATTCACTGCCAAAGCTTTTCGTGATTCGGCCATTCCTATCATTGATGCCATATTGTCTAGAAATCACTTACCAGTTATAGTTGGCGGTACTAATTATTATATACAGGCTCTTGTGACTTTGTTTCTGTTAGATGATTCCACAGATGAGTTGAATGAAAGCAATTTAGGTGACTCACCGGGTATCGCAGGGTGTGATAATAGTATTGCGGCTGAAAACGACTGTTCTGGCTACAGTTATGACTTGCTTAAAGATATTGACCCAGTTGCAGCAAATAGAATCCATCCAAATAACCTAAGAAAGATAAACCAATACATTAGTTTGTACTCTCGTACCGGTGTTCTTCCCAGTAAAGTCTTTCAAGGACAGGCAGCAGAGAAGTGGGGCCAAGCTGATAACTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCATCTCTCCCAGTATTGGACAGATATGTGGAGCAAAGGGTAGATCACATGATGGATGCAGGATTACTCAATGAAGTCTATAACATTTACTCTATGAATGCAGATTATACCAGAGGTTTGCGACAAGCCATTGGTGTCCGTGAATTTGAGCATCTTCTTCAAACCTGTGTTTTGAATAACATAAATGAGAAAGCGAAGGAGTTAACTGATGGAGTGAGCTTAGAAAATGGCGAGCCAGTGCTTGATGGAAATTTAATGGAGTGGTTTAGATCTTCCTCTGATACTAAATCCACATATCTTTTGGAAGAAGCAATCGAGAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGTCAGAAGAGGATGCTGAGTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACGGAATCAATATCGAGCAGATCAAATGATGTATGGAATAGCCAAGTGGTTGAAACTGCGATGAAGATAGTGACATCTTTCCTGAGCGAGAATGGTAACTTGTCGATGTCAAATGGCAATGGGATGAAAACAATCCAAAGGGATCTCTGGACTCAATACACATGCAAGGCCTGCGGTGATCGTGTTCTTCGAGGAATACATGAATGGGAAGAACACAAACGCGGTCGTGGGCATCGCAAACGTATTTCTAGTCTCAAGAGCAAGGCAAACTATCTTAGTTTTGTGGAGCAGAAGCGTGAGCCATCCGAGCGGTAA 1416 0.4343 MATENTVTSNPSHRERPKVVVITGPTASGKSKLAVDLASHFPLEVINADSMQVYTGLDILTNKLPFSEQNGVPHHLLGTVNPNTEFTAKAFRDSAIPIIDAILSRNHLPVIVGGTNYYIQALVTLFLLDDSTDELNESNLGDSPGIAGCDNSIAAENDCSGYSYDLLKDIDPVAANRIHPNNLRKINQYISLYSRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASLPVLDRYVEQRVDHMMDAGLLNEVYNIYSMNADYTRGLRQAIGVREFEHLLQTCVLNNINEKAKELTDGVSLENGEPVLDGNLMEWFRSSSDTKSTYLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWDIHYVDSTESISSRSNDVWNSQVVETAMKIVTSFLSENGNLSMSNGNGMKTIQRDLWTQYTCKACGDRVLRGIHEWEEHKRGRGHRKRISSLKSKANYLSFVEQKREPSER 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00003 471 Gene3D Classic Zinc Finger 417 461 - -
Vifa6g00003 471 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 395 IPR039657 -
Vifa6g00003 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
Vifa6g00003 471 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 293 IPR018022 GO:0008033
Vifa6g00003 471 Pfam IPP transferase 52 349 - -
Vifa6g00003 471 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Vifa6g00003 471 FunFam tRNA dimethylallyltransferase 415 458 - -
Vifa6g00003 471 Gene3D - 151 208 - -
Vifa6g00003 471 Gene3D - 17 416 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00003 Vifa-Chr6 811955 814574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00003 22 458 C2H2 Transcription Factor Family AT2G27760 56.629 1.98e-170 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00003 K00791 - gmx:100792690 705.286