Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04079 ATGCTTAACCACATTTTACCTGTCATTGTTTTCTTCCCTATTATTTTATTTCCACATTTGTTAACGTGCACCCAAGTACTCTTGTTAGTTACCATCATCATCACTGTTTCTTCTTCCTTGTACTATATTTACACATCAATATATCAAACATTTTCTTACATACTTAGATCGATTCGGTTCACGATGAGCAGCAACGGATCACAGTTTGGGGACACTACGCTGACCAAAGTGTTTGTTGGAGGTCTTGCTTGGGAGACTCCGAAGGACACACTGAGAGAACATTTTGAAAAGTACGGGGAAATCCTTGAAGCTGTTATCATTTCTGATAAGGCTACTGGCAGATCCAAAGGCTACGGGTTTGTGACTTTTAAGGAAGCAGAGGCGGCAAACAAGGCTTGCGAGGAACCCACTGTCATGATCAATGGCCGTCGAGCCAACTGCAATATCGCATCTCACGGTGCTCGCCGTCAGAAGTCTCCTCTTCCACCGCCATACACCCAAGGAACCAAGAACCGTGAGAGCCAGCAAGTTCAGTGGTATTATCCGGTGGGAACACCCACACCTGCACCTCCTTCTCCATTCCATCATCACGCCATTCCTTTTTACGGGTATACGCCAACCACCACCTACATTGCACCAGATCATATGAATTACAGTTACAATTACAATTACAATCAGAAGCTGAACTATGGAATGGGTGGGGTCTATGTTTACCCGACTCGGCAGGGTATTGTGCCAGTGATGCATCCTTTCTACAGAACCGAAACTATGGGTGTACCTGCACCTCAAATCTTCCATCCACTACCACCTAATTATCCTCCTTCCATCACTCCTACTCCTACTACAGGTGAATGTTTCAAAAGAGTAGTCGTATGA 876 0.4486 MLNHILPVIVFFPIILFPHLLTCTQVLLLVTIIITVSSSLYYIYTSIYQTFSYILRSIRFTMSSNGSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGEILEAVIISDKATGRSKGYGFVTFKEAEAANKACEEPTVMINGRRANCNIASHGARRQKSPLPPPYTQGTKNRESQQVQWYYPVGTPTPAPPSPFHHHAIPFYGYTPTTTYIAPDHMNYSYNYNYNQKLNYGMGGVYVYPTRQGIVPVMHPFYRTETMGVPAPQIFHPLPPNYPPSITPTPTTGECFKRVVV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04079 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Vifa5g04079 291 FunFam Putative RNA-binding protein ARP1 69 157 - -
Vifa5g04079 291 SMART rrm1_1 76 148 IPR000504 GO:0003723
Vifa5g04079 291 Gene3D - 61 160 IPR012677 -
Vifa5g04079 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Vifa5g04079 291 PANTHER BOULE-RELATED 63 263 - -
Vifa5g04079 291 MobiDBLite consensus disorder prediction 151 172 - -
Vifa5g04079 291 SUPERFAMILY RNA-binding domain, RBD 56 159 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04079 Vifa-Chr5 1292748360 1292749615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04079 34 151 C2H2 Transcription Factor Family AT2G19380 36.441 5.30e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04079 - - mtr:25499746 291.967