Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04078 ATGGATCGTATCAATAATTTAACCAAGAAAAGAACCATTTTGTTCAACAAATACGAGATAGTGATTAAGAAGGAGAAGCTCAAGAAAGAGAGGCTTATGAAACAAATCAAACGCGAAGTTTCTGTTATGAGTCTCGTTCGTCATCCTCACATTGTTGAGTTGAAAGAGGTTATGGCGAACAAAGCCAAAGTGTTCGTGGTCGTTGAATACGTCAAAGGCGGCGAGCTTTTCGCCAAAGTTGCCAAAGGGAAGATGAAAGAGGAGATTGCGAGGAAGTATTTTCAACAACTGATTAGTGTTGTTGATTTCTGTCATAGTCGCGGTGTTACGCATCGTGATTTGAAGCCGGAGAACCTGTTGTTGGATGAGAATGAAGATCTCAAGGTTTCAGATTTTGGATTGTCGGCGTTGCCGGATAAACGAAGATCCGATGGGATGCTTGTTAGGCCGTGCGGGACTCCGGCGTACGTTGCGCCGGAGGTTTTGAAGAAGATTGGATATGATGGATCGAAGGCTGATATTTGGTCTTGTGGTGTGATTCTGTATGCTTTGCTCTGTGGATATTTGCCTTTTCAAGGGGAGAATGTGATGAGGATTTATAGTAAATCTTTTAAAGAGGATTATGCTTTGCCGGAATGGATTTCACCGGGGGCCAAGAAATTGATTAAGAATTTGCTTGTTGTTGATCCTGAAAAGAGGTTTTCGATTGTTGATATTATGAAAGATCCTTGGTTTCAAGTAGGGTTTATGAGACCTATTGCTTTTTCGATGAAGGAATCTGCTGTGGATGATAACATTGATTTTAGTGGTGATGATGAAGGGAATTATGATGGGAGTAATGCTGAGGTTGTGGCTGGGATCGGTACCAAACATGCCAGGAGGCCGTCTTATAATGCGTTTGAGATCATTTCGTCCTTGTCGCATGGATTTGATTTGAGGAATTTGTTTGAGACTAGGAAGAGATCGCCGTCCATGTTTATATCGAAATTGTCCGCCTCCACGGTGAAGGTTCAGATTTCCTTTTGCTTCTTTTATTTTTCTTTTTCACAATTTATTGTTTATCGCGTTTGA 1071 0.4136 MDRINNLTKKRTILFNKYEIVIKKEKLKKERLMKQIKREVSVMSLVRHPHIVELKEVMANKAKVFVVVEYVKGGELFAKVAKGKMKEEIARKYFQQLISVVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDKRRSDGMLVRPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYSKSFKEDYALPEWISPGAKKLIKNLLVVDPEKRFSIVDIMKDPWFQVGFMRPIAFSMKESAVDDNIDFSGDDEGNYDGSNAEVVAGIGTKHARRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKLSASTVKVQISFCFFYFSFSQFIVYRV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04078 356 Gene3D Transferase(Phosphotransferase) domain 1 10 296 - -
Vifa5g04078 356 FunFam Maternal embryonic leucine zipper kinase 15 273 - -
Vifa5g04078 356 ProSiteProfiles Protein kinase domain profile. 1 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g04078 356 SMART serkin_6 7 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g04078 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Vifa5g04078 356 Pfam Protein kinase domain 20 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g04078 356 SUPERFAMILY Protein kinase-like (PK-like) 15 246 IPR011009 -
Vifa5g04078 356 Gene3D Kinase associated domain 1, KA1 297 341 - -
Vifa5g04078 356 Pfam NAF domain 296 337 IPR004041 GO:0007165
Vifa5g04078 356 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 330 - -
Vifa5g04078 356 ProSiteProfiles NAF domain profile. 292 317 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04078 Vifa-Chr5 1292618270 1292619421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04078 21 335 CBL-interacting serine-threonine protein kinases AT5G25110 58.228 5.72e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa5g04078 Pkinase 2.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04078 - - gmx:100797846 515.383