Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g04072 | ATGGAGCATGCAATTAGGGTTTCATCTCCCTCTTACTGGTTAGATGCTTGCGAAGATATCCCATGTGATGATTTCATTGATTTCGATGTCTCTGACCCCAATCACCACCAACAACAACAATCCAATCATAACAATAATAATCAAGATTTTTTTGGCGGTATTGATCGAATCTTGGACAGTATCAAGAACGGTGCTGACCTATCTCTTCCCGTCACTCCGCCACCGCCACTTCTCAGTGATGATGATGCTAACCACCTCTCAAATGTGAAGAATCCTGATGCTGGTGCCGTTGTTGAGTTTGTTGATCAATATGAAGAAAGGTTCAGCAAAAGAGCTCGTGTTAATGGATACAGCAATGAGAGAAGAATTAATCATCAGACGAACGGCAAGGAGAAGTATGACCGGTGTTTTAGTGGTCGGAAGAGGCCGAGGAGTCAGGATTTCAAGAAAAGGGATAATTCTGTTTGTGTTAGGAGAGATGTTAAGGGTTATTGGGAGAGGGATAAGTCTTCTGGTTCTAATGATTTGGTGTTTCGCTCCGGAACTTGGGAGCCTGATCGGATTCGACAAGATAAAATGATTGTTGATGTCAAACAGGAAACTAGTGACGACAAGAGTATCGATAAGGTTAGTAAGGAGAAGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGAGCAGAAATACGATAGCTTTTCTAGAAACCGGGGCTGGGAAAACGCTCATTGCTGTTCTTCTCATTAAATCTATACATGACACTTTAAATCAGCAGAATAAGAAAATGCTTGCAGTGTTTTTGGTTCCTAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATCCGTGAGCGCACTGGATATCAAGTGGGTCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGGGAATTTGACACTAAGCATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGACATAGCATAATAAAAATGGAAGGAGTCAATCTCCTGATTCTGGATGAATGCCATCATGCTGTAAAGAAACACCCATATTCCCTCGTGATGTCCGAGTTCTACCATACAACACCCAAAGAAAAGAGGCCATCTGTATTCGGAATGACTGCTTCTCCTGTTAACCTTAAGGGTGTCTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGCAAAGAGCTGGAGAAACATGTGCCTATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCGGCCAGTCTGTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTGTACGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTGGGACAGTGGTGTTCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTGTCTCTTCTGAAATGTCAACTGTCAGAGGGTGCCGTTTCCGACAAAAATGATGGAGTAGATGACTCAGGTAATGGTGCAGCTCACAATGGGTCTGATGAACTCGAAGAGATTGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGTGGGGAGCACGTGGATGTCATAATAGGTGCTGCTGTGGCCGATGGCAAGGTGACCCCTAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTGGTTCTACCAAAGGTTTTTGCTGAGCTTCCTTCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATTCGACAATGTAATGTTGTTATTCGCTTTGATCTCGCAAAGACCGTTCTGGCATACATTCAGTCTAGGGGACGTGCTAGAAAGCCCGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCTCATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGAAGAGAAGCAATAGAAAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCCACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCCGAGTTTATTATGGAGAAGCATGAAAACTCCGGAGGCCCCACTGAATATTCTTGCAGGCTTCAACTGCCATGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTTACTGACATGTTATTGCCTGATAAAGGAAGTGGGGGAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGGCATAGGGAGTTCTATCCTGAAGGTGTGGCCGATATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAAGGACTCCAAATTGCTTCATCTTTATTTGTATACCATAAAGTGCGAGAATGTAGGCCAGTCAAAGGATCCGTTCTTGACTCAGGTTTCAGATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCCATGGATCTATTTATTGCTCGAACCGTGACTACCAAGGCATCTCTTGTCTTTAGAGAGTCAATAGACATCACTGAGAATCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTCGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGATAATAATTGGAGCTGATGCATGGAAAAATCCTCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACTTTGGGTGGCGATAGAAGGGAATACGGATTTGGGAAGTTGCGTCATGGCTTGGCTTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGA | 3444 | 0.4332 | MEHAIRVSSPSYWLDACEDIPCDDFIDFDVSDPNHHQQQQSNHNNNNQDFFGGIDRILDSIKNGADLSLPVTPPPPLLSDDDANHLSNVKNPDAGAVVEFVDQYEERFSKRARVNGYSNERRINHQTNGKEKYDRCFSGRKRPRSQDFKKRDNSVCVRRDVKGYWERDKSSGSNDLVFRSGTWEPDRIRQDKMIVDVKQETSDDKSIDKVSKEKVPEEKARQYQLDVLEQAKSRNTIAFLETGAGKTLIAVLLIKSIHDTLNQQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEGVNLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCSYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGVDDSGNGAAHNGSDELEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACKDSKLLHLYLYTIKCENVGQSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITENQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPMNQIDWHLVEIIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFWAKITSNLWNQRSCGPV | 1147 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g04072 | 1147 | MobiDBLite | consensus disorder prediction | 32 | 50 | - | - | |
Vifa5g04072 | 1147 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 816 | 911 | IPR005034 | GO:0016891 | |
Vifa5g04072 | 1147 | SMART | helicmild6 | 657 | 743 | IPR001650 | - | |
Vifa5g04072 | 1147 | FunFam | Endoribonuclease dicer-like protein | 215 | 455 | - | - | |
Vifa5g04072 | 1147 | CDD | SF2_C_dicer | 621 | 751 | - | - | |
Vifa5g04072 | 1147 | CDD | DEXHc_dicer | 219 | 418 | - | - | |
Vifa5g04072 | 1147 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 227 | 404 | IPR014001 | - | |
Vifa5g04072 | 1147 | Gene3D | - | 614 | 780 | IPR027417 | - | |
Vifa5g04072 | 1147 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 267 | 755 | IPR027417 | - | |
Vifa5g04072 | 1147 | PANTHER | DICER-RELATED | 234 | 1127 | - | - | |
Vifa5g04072 | 1147 | SMART | ultradead3 | 216 | 419 | IPR014001 | - | |
Vifa5g04072 | 1147 | MobiDBLite | consensus disorder prediction | 905 | 926 | - | - | |
Vifa5g04072 | 1147 | MobiDBLite | consensus disorder prediction | 902 | 926 | - | - | |
Vifa5g04072 | 1147 | Gene3D | - | 214 | 459 | IPR027417 | - | |
Vifa5g04072 | 1147 | MobiDBLite | consensus disorder prediction | 31 | 50 | - | - | |
Vifa5g04072 | 1147 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 627 | 788 | IPR001650 | - | |
Vifa5g04072 | 1147 | Pfam | Helicase conserved C-terminal domain | 624 | 741 | IPR001650 | - | |
Vifa5g04072 | 1147 | MobiDBLite | consensus disorder prediction | 124 | 151 | - | - | |
Vifa5g04072 | 1147 | Gene3D | Dicer dimerisation domain | 811 | 913 | IPR038248 | - | |
Vifa5g04072 | 1147 | FunFam | Endoribonuclease dicer-like 1 | 615 | 777 | - | - | |
Vifa5g04072 | 1147 | Pfam | Dicer dimerisation domain | 816 | 904 | - | - | |
Vifa5g04072 | 1147 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 160 | 354 | IPR027417 | - | |
Vifa5g04072 | 1147 | FunFam | Endoribonuclease dicer-like 1 | 811 | 912 | - | - | |
Vifa5g04072 | 1147 | Pfam | DEAD/DEAH box helicase | 223 | 385 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g04072 | Vifa-Chr5 | 1289180217 | 1289187429 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g04072 | 640 | 783 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 28.571 | 4.26e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g04072 | K11592 | - | gmx:100811631 | 1833.54 |