Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04072 ATGGAGCATGCAATTAGGGTTTCATCTCCCTCTTACTGGTTAGATGCTTGCGAAGATATCCCATGTGATGATTTCATTGATTTCGATGTCTCTGACCCCAATCACCACCAACAACAACAATCCAATCATAACAATAATAATCAAGATTTTTTTGGCGGTATTGATCGAATCTTGGACAGTATCAAGAACGGTGCTGACCTATCTCTTCCCGTCACTCCGCCACCGCCACTTCTCAGTGATGATGATGCTAACCACCTCTCAAATGTGAAGAATCCTGATGCTGGTGCCGTTGTTGAGTTTGTTGATCAATATGAAGAAAGGTTCAGCAAAAGAGCTCGTGTTAATGGATACAGCAATGAGAGAAGAATTAATCATCAGACGAACGGCAAGGAGAAGTATGACCGGTGTTTTAGTGGTCGGAAGAGGCCGAGGAGTCAGGATTTCAAGAAAAGGGATAATTCTGTTTGTGTTAGGAGAGATGTTAAGGGTTATTGGGAGAGGGATAAGTCTTCTGGTTCTAATGATTTGGTGTTTCGCTCCGGAACTTGGGAGCCTGATCGGATTCGACAAGATAAAATGATTGTTGATGTCAAACAGGAAACTAGTGACGACAAGAGTATCGATAAGGTTAGTAAGGAGAAGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGAGCAGGCAAAGAGCAGAAATACGATAGCTTTTCTAGAAACCGGGGCTGGGAAAACGCTCATTGCTGTTCTTCTCATTAAATCTATACATGACACTTTAAATCAGCAGAATAAGAAAATGCTTGCAGTGTTTTTGGTTCCTAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATCCGTGAGCGCACTGGATATCAAGTGGGTCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGGGAATTTGACACTAAGCATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGACATAGCATAATAAAAATGGAAGGAGTCAATCTCCTGATTCTGGATGAATGCCATCATGCTGTAAAGAAACACCCATATTCCCTCGTGATGTCCGAGTTCTACCATACAACACCCAAAGAAAAGAGGCCATCTGTATTCGGAATGACTGCTTCTCCTGTTAACCTTAAGGGTGTCTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGCAAAGAGCTGGAGAAACATGTGCCTATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCGGCCAGTCTGTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTGTACGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTGGGACAGTGGTGTTCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTGTCTCTTCTGAAATGTCAACTGTCAGAGGGTGCCGTTTCCGACAAAAATGATGGAGTAGATGACTCAGGTAATGGTGCAGCTCACAATGGGTCTGATGAACTCGAAGAGATTGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGTGGGGAGCACGTGGATGTCATAATAGGTGCTGCTGTGGCCGATGGCAAGGTGACCCCTAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTGGTTCTACCAAAGGTTTTTGCTGAGCTTCCTTCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATTCGACAATGTAATGTTGTTATTCGCTTTGATCTCGCAAAGACCGTTCTGGCATACATTCAGTCTAGGGGACGTGCTAGAAAGCCCGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCTCATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGAAGAGAAGCAATAGAAAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCCACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCCGAGTTTATTATGGAGAAGCATGAAAACTCCGGAGGCCCCACTGAATATTCTTGCAGGCTTCAACTGCCATGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTTACTGACATGTTATTGCCTGATAAAGGAAGTGGGGGAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGGCATAGGGAGTTCTATCCTGAAGGTGTGGCCGATATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAAGGACTCCAAATTGCTTCATCTTTATTTGTATACCATAAAGTGCGAGAATGTAGGCCAGTCAAAGGATCCGTTCTTGACTCAGGTTTCAGATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCCATGGATCTATTTATTGCTCGAACCGTGACTACCAAGGCATCTCTTGTCTTTAGAGAGTCAATAGACATCACTGAGAATCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTCGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGATAATAATTGGAGCTGATGCATGGAAAAATCCTCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACTTTGGGTGGCGATAGAAGGGAATACGGATTTGGGAAGTTGCGTCATGGCTTGGCTTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGA 3444 0.4332 MEHAIRVSSPSYWLDACEDIPCDDFIDFDVSDPNHHQQQQSNHNNNNQDFFGGIDRILDSIKNGADLSLPVTPPPPLLSDDDANHLSNVKNPDAGAVVEFVDQYEERFSKRARVNGYSNERRINHQTNGKEKYDRCFSGRKRPRSQDFKKRDNSVCVRRDVKGYWERDKSSGSNDLVFRSGTWEPDRIRQDKMIVDVKQETSDDKSIDKVSKEKVPEEKARQYQLDVLEQAKSRNTIAFLETGAGKTLIAVLLIKSIHDTLNQQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEGVNLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCSYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGVDDSGNGAAHNGSDELEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVADILKGEWILSGKDACKDSKLLHLYLYTIKCENVGQSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITENQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPMNQIDWHLVEIIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFWAKITSNLWNQRSCGPV 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04072 1147 MobiDBLite consensus disorder prediction 32 50 - -
Vifa5g04072 1147 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 816 911 IPR005034 GO:0016891
Vifa5g04072 1147 SMART helicmild6 657 743 IPR001650 -
Vifa5g04072 1147 FunFam Endoribonuclease dicer-like protein 215 455 - -
Vifa5g04072 1147 CDD SF2_C_dicer 621 751 - -
Vifa5g04072 1147 CDD DEXHc_dicer 219 418 - -
Vifa5g04072 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 404 IPR014001 -
Vifa5g04072 1147 Gene3D - 614 780 IPR027417 -
Vifa5g04072 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 755 IPR027417 -
Vifa5g04072 1147 PANTHER DICER-RELATED 234 1127 - -
Vifa5g04072 1147 SMART ultradead3 216 419 IPR014001 -
Vifa5g04072 1147 MobiDBLite consensus disorder prediction 905 926 - -
Vifa5g04072 1147 MobiDBLite consensus disorder prediction 902 926 - -
Vifa5g04072 1147 Gene3D - 214 459 IPR027417 -
Vifa5g04072 1147 MobiDBLite consensus disorder prediction 31 50 - -
Vifa5g04072 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 627 788 IPR001650 -
Vifa5g04072 1147 Pfam Helicase conserved C-terminal domain 624 741 IPR001650 -
Vifa5g04072 1147 MobiDBLite consensus disorder prediction 124 151 - -
Vifa5g04072 1147 Gene3D Dicer dimerisation domain 811 913 IPR038248 -
Vifa5g04072 1147 FunFam Endoribonuclease dicer-like 1 615 777 - -
Vifa5g04072 1147 Pfam Dicer dimerisation domain 816 904 - -
Vifa5g04072 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 354 IPR027417 -
Vifa5g04072 1147 FunFam Endoribonuclease dicer-like 1 811 912 - -
Vifa5g04072 1147 Pfam DEAD/DEAH box helicase 223 385 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04072 Vifa-Chr5 1289180217 1289187429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04072 640 783 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 4.26e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04072 K11592 - gmx:100811631 1833.54