Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04071 ATGACACCGATGAAAGGCAAGCCAACCCAGTCTGGTATGCTCCTCCCTCTCATTATTCTACACCAAATCATTCATATTCTTCCAAATAACATCCATCATGACAGCCACTCTACCGACTACCCTGATATCTTCTTTGTTACAAATGTTAAAAATAACGAATTTGACATCAGGTTCAATTGTTCTTCCATTGGCTTACGAACAGCCATTGATCTCGGTGTCTTTGAAATCCTAGCCAAAGCTGGTGATGGCGCAGAACTATCTGCAGAAGACATTGCTATTAAGATTGGAACCAAGAATCCACAAGGACCAACAATGTTTGGACCGTGTTCTTTGCTTCTTGTCGATGGCGTCTCGTTGGGACCAATGTTAGCATTGCTTCTCGACAACGTCTTCTACCAAAGCTGGACAGAATTGAAAGGAGCGATCATGGAAGGAGGTGTACCATTCGATAGGGTTCATGGAATGCAAGCATTTGAGTATCCACGTGTGGATCAAAGTTCATGA 504 0.4306 MTPMKGKPTQSGMLLPLIILHQIIHILPNNIHHDSHSTDYPDIFFVTNVKNNEFDIRFNCSSIGLRTAIDLGVFEILAKAGDGAELSAEDIAIKIGTKNPQGPTMFGPCSLLLVDGVSLGPMLALLLDNVFYQSWTELKGAIMEGGVPFDRVHGMQAFEYPRVDQSS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04071 167 Pfam Dimerisation domain 65 105 IPR012967 GO:0046983
Vifa5g04071 167 Gene3D Vaccinia Virus protein VP39 115 167 IPR029063 -
Vifa5g04071 167 SUPERFAMILY "Winged helix" DNA-binding domain 61 106 IPR036390 -
Vifa5g04071 167 Gene3D - 57 114 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04071 Vifa-Chr5 1288520024 1288521707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04071 46 164 Monolignol Biosynthesis Gene Families AT5G54160 30.769 3.27e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04071 K13066 - csav:115706437 119.783