Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04070 ATGAAGATGGTTCTTAATTGTTATAATGGTTTTGAGAATATAAATAAGCTCGTCGATGTTGGTGGTGGTCTTGGAATTAATCTCAAATTGATTACATCAAAATATTCTCATATTAAAGGAATTAATTTTGATTTGCCTCATGTCTTAGAACATGCACCTTCTTATCCGGATGTGGAACATGTGGGAGGAGATATGTTCGAGAGTGTTCCTTCGGGGGATGCAATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACATTGTTTGAAGTTGTTGAAAAATTGTTACAAAGCAATTCCTGAAGATGGAAAGGTTATTGTGGTGGAAGCAGTTCTTCCTATTTTGCCAGAGACAAGTGCAGTTGCTAAGAATGGTTACATGTCTGATCTTATAATGTTGGCACAAAATCCAGGAGGAAAAGAGAGAAATGAGAATGAATTTATGGAATTGGCAAAAGGATCTGGATTTAGTGGTGTCAAACATGTATGTTCTATTTCTGGATTAGTGGTTATGGAGTTCTATAAATAG 531 0.354 MKMVLNCYNGFENINKLVDVGGGLGINLKLITSKYSHIKGINFDLPHVLEHAPSYPDVEHVGGDMFESVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVEAVLPILPETSAVAKNGYMSDLIMLAQNPGGKERNENEFMELAKGSGFSGVKHVCSISGLVVMEFYK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04070 176 Gene3D Vaccinia Virus protein VP39 1 165 IPR029063 -
Vifa5g04070 176 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 176 IPR016461 GO:0008168
Vifa5g04070 176 Pfam O-methyltransferase domain 2 158 IPR001077 GO:0008171
Vifa5g04070 176 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 173 IPR029063 -
Vifa5g04070 176 PANTHER O-METHYLTRANSFERASE 1 174 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04070 Vifa-Chr5 1288519293 1288519983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04070 1 176 Monolignol Biosynthesis Gene Families AT5G54160 63.068 2.00e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04070 K13066 - gmx:100789402 290.426