Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g04067 | ATGGCCACCAACGCCGCCACTCTCTCTCTTTCCTCCTCGTTACTTGATAGCTCAAAACGATTCGTTTCGTTTTCTACCGTGCCTTATCCTTATCCTTCTCTATCTCATTTTGTTCTCAGTCACACCTCCAAGCCTAGGGTTTCCACTCCCTTTGCCTTAGCGGCTGTCGTCAATGGCCAAACGGCAATCGTCGATGGAGAAGAAAAACGACGGAAGCTCGGAAATCCGACTCAAGTTTACGTTTGCAACCTTCCTAGAAGCTGTGACACTCAACAACTAATTCCAATCTTCACTCCTCATGGAACCGTTCTATCTGCAGAGGTTTGTCGGAATGCTGAGACAGGTGCCAGTAAAGGGAGTGCTTATGTAACTATGGGATCTTATAATGCTGCTAAAAATGCAATTGATGCATTGGATGGATTGGATGTTGGTGGACGCGAAGTGCGGGTTAAATTTTCAGTTCAGATGAATACTAAGAAGAAGAATTTAGAGACATCGGATTCACTACCTCCTGTGAGAACTATATACTATGAAGGTCCTTATAAGGTGTATGTTGGGAATCTTGCTAGAACTACTACACCTGAAGATGTGAGACATCTGTTTGGTAAATTTGGAAATGTGGCTAGTGTGAGGGTGTTGGAAGATTTGAAACAGGGGAAAAACCGAGTCTACGCTTTTGTATCTTATCTTTCTCAGCCAGAACGTGAAGCCTCAATGTCCCTCAATGGAACTGAATTTGGTAGTCGAACTCTAGTGGTTAGAGCGGCTGTGGAGAAGACCGAGACCTAA | 789 | 0.4436 | MATNAATLSLSSSLLDSSKRFVSFSTVPYPYPSLSHFVLSHTSKPRVSTPFALAAVVNGQTAIVDGEEKRRKLGNPTQVYVCNLPRSCDTQQLIPIFTPHGTVLSAEVCRNAETGASKGSAYVTMGSYNAAKNAIDALDGLDVGGREVRVKFSVQMNTKKKNLETSDSLPPVRTIYYEGPYKVYVGNLARTTTPEDVRHLFGKFGNVASVRVLEDLKQGKNRVYAFVSYLSQPEREASMSLNGTEFGSRTLVVRAAVEKTET | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g04067 | 262 | Gene3D | - | 58 | 168 | IPR012677 | - | |
Vifa5g04067 | 262 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 183 | 251 | IPR000504 | GO:0003723 | |
Vifa5g04067 | 262 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 79 | 149 | IPR000504 | GO:0003723 | |
Vifa5g04067 | 262 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 181 | 258 | IPR000504 | GO:0003723 | |
Vifa5g04067 | 262 | Gene3D | - | 176 | 262 | IPR012677 | - | |
Vifa5g04067 | 262 | SMART | rrm1_1 | 182 | 254 | IPR000504 | GO:0003723 | |
Vifa5g04067 | 262 | SMART | rrm1_1 | 78 | 151 | IPR000504 | GO:0003723 | |
Vifa5g04067 | 262 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 77 | 155 | IPR000504 | GO:0003723 | |
Vifa5g04067 | 262 | SUPERFAMILY | RNA-binding domain, RBD | 178 | 260 | IPR035979 | GO:0003676 | |
Vifa5g04067 | 262 | PANTHER | OS02G0815200 PROTEIN | 23 | 259 | - | - | |
Vifa5g04067 | 262 | SUPERFAMILY | RNA-binding domain, RBD | 73 | 160 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g04067 | Vifa-Chr5 | 1287891175 | 1287892747 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g04067 | 72 | 261 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 29.319 | 1.45e-17 | 80.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g04067 | - | - | tpra:123889530 | 306.219 |