Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04067 ATGGCCACCAACGCCGCCACTCTCTCTCTTTCCTCCTCGTTACTTGATAGCTCAAAACGATTCGTTTCGTTTTCTACCGTGCCTTATCCTTATCCTTCTCTATCTCATTTTGTTCTCAGTCACACCTCCAAGCCTAGGGTTTCCACTCCCTTTGCCTTAGCGGCTGTCGTCAATGGCCAAACGGCAATCGTCGATGGAGAAGAAAAACGACGGAAGCTCGGAAATCCGACTCAAGTTTACGTTTGCAACCTTCCTAGAAGCTGTGACACTCAACAACTAATTCCAATCTTCACTCCTCATGGAACCGTTCTATCTGCAGAGGTTTGTCGGAATGCTGAGACAGGTGCCAGTAAAGGGAGTGCTTATGTAACTATGGGATCTTATAATGCTGCTAAAAATGCAATTGATGCATTGGATGGATTGGATGTTGGTGGACGCGAAGTGCGGGTTAAATTTTCAGTTCAGATGAATACTAAGAAGAAGAATTTAGAGACATCGGATTCACTACCTCCTGTGAGAACTATATACTATGAAGGTCCTTATAAGGTGTATGTTGGGAATCTTGCTAGAACTACTACACCTGAAGATGTGAGACATCTGTTTGGTAAATTTGGAAATGTGGCTAGTGTGAGGGTGTTGGAAGATTTGAAACAGGGGAAAAACCGAGTCTACGCTTTTGTATCTTATCTTTCTCAGCCAGAACGTGAAGCCTCAATGTCCCTCAATGGAACTGAATTTGGTAGTCGAACTCTAGTGGTTAGAGCGGCTGTGGAGAAGACCGAGACCTAA 789 0.4436 MATNAATLSLSSSLLDSSKRFVSFSTVPYPYPSLSHFVLSHTSKPRVSTPFALAAVVNGQTAIVDGEEKRRKLGNPTQVYVCNLPRSCDTQQLIPIFTPHGTVLSAEVCRNAETGASKGSAYVTMGSYNAAKNAIDALDGLDVGGREVRVKFSVQMNTKKKNLETSDSLPPVRTIYYEGPYKVYVGNLARTTTPEDVRHLFGKFGNVASVRVLEDLKQGKNRVYAFVSYLSQPEREASMSLNGTEFGSRTLVVRAAVEKTET 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04067 262 Gene3D - 58 168 IPR012677 -
Vifa5g04067 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 251 IPR000504 GO:0003723
Vifa5g04067 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 149 IPR000504 GO:0003723
Vifa5g04067 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Vifa5g04067 262 Gene3D - 176 262 IPR012677 -
Vifa5g04067 262 SMART rrm1_1 182 254 IPR000504 GO:0003723
Vifa5g04067 262 SMART rrm1_1 78 151 IPR000504 GO:0003723
Vifa5g04067 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Vifa5g04067 262 SUPERFAMILY RNA-binding domain, RBD 178 260 IPR035979 GO:0003676
Vifa5g04067 262 PANTHER OS02G0815200 PROTEIN 23 259 - -
Vifa5g04067 262 SUPERFAMILY RNA-binding domain, RBD 73 160 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04067 Vifa-Chr5 1287891175 1287892747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04067 72 261 Eukaryotic Initiation Factors Gene Family AT1G22760 29.319 1.45e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04067 - - tpra:123889530 306.219