Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04063 ATGTCGGAAGGTGCGGAAATTGACGAGCGTGTTGACCTCGATGAGGAACATTATATGGAAGAAATGGATGACGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGGTGAAGAAAATGAGTACGAGGAGTCAGCGGTAGATGTTGATGGGAAAGAACAATTTCCTGAAGGAGAAAAGAGTGACCGTGCTTCTGAAGAAGATGAGCGAAAATCACCTCTTATTGATGAGGAGGAAAGAGAGAAGTACGATAAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTATTTATTGGTGGACTTCCTCGGGATACATGTGATGATGATTTAAGGGAATTGTGTGCACCAATGGGTGATATTGTTGAGATTAAACTAATCAAAGACAGGGAAACCGGAGACAGCAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGAGGCACAAAAGGCCATTGAAGATATACATAACAAGGAATTTAAGAGCAAAACATTGAGGTGTTCGCTGTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGTCAGAGGATGAGTTTAGGAAAGCCGTTGAGGCTGTTGGTCCAGGGGTTGAAAGCATTGACCTCATAAAGGACCCTCAAAATCAAAGCAAAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAATGCTTGTGCTGATTATTCACGACAAAAGATGTCAAATTCGAGTTTCAAGCTAGATGGAAATACACCAACTGTGACATGGGCAGATCCAAAGACCTCACCTGACAATTCTGCTGCTTCTTCACAGGTTAAAGCTCTGTATGTGAAAAACATACCTGAGAATGTTACTACTGATCAACTAAAGGAGCTATTTCAGCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCCGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTTATGGTCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGGGTACAATCCTGGACTCCATCCTACCCATCTTCCACATCCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTATAGGGGCTGGATATGGTGTTGCTGCTGCTGGTTATCAACAGCCAATGATATACGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGACGGCCGAATTGGCTATGTCCTCCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCCCGCAGAAATGACCGGGGAAATGGTCCAGGTGGTCAGCCAGGGCGTGGAGGAGGTAGTGGTAATGATGAAGGAAATCGTAACAGAAGGTATCGACCCTATTAG 1446 0.4378 MSEGAEIDERVDLDEEHYMEEMDDDVEEQIDDDGVDGGEDENAEGSGEENEYEESAVDVDGKEQFPEGEKSDRASEEDERKSPLIDEEEREKYDKLLALPPHGSEVFIGGLPRDTCDDDLRELCAPMGDIVEIKLIKDRETGDSKGYAFVAFKTKEEAQKAIEDIHNKEFKSKTLRCSLSETKHRLFIGNVPKTWSEDEFRKAVEAVGPGVESIDLIKDPQNQSKNRGFAFVLYYNNACADYSRQKMSNSSFKLDGNTPTVTWADPKTSPDNSAASSQVKALYVKNIPENVTTDQLKELFQRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIYGQALEVVIAKPQAEKKPDGGYGYNPGLHPTHLPHPGYGNFSGNLYGSIGAGYGVAAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQPGRGGGSGNDEGNRNRRYRPY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04063 481 SUPERFAMILY RNA-binding domain, RBD 182 269 IPR035979 GO:0003676
Vifa5g04063 481 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 184 - -
Vifa5g04063 481 MobiDBLite consensus disorder prediction 1 91 - -
Vifa5g04063 481 Gene3D - 185 265 IPR012677 -
Vifa5g04063 481 CDD RRM_SF 106 178 - -
Vifa5g04063 481 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 185 265 - -
Vifa5g04063 481 Gene3D - 266 385 IPR012677 -
Vifa5g04063 481 Gene3D - 9 184 IPR012677 -
Vifa5g04063 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Vifa5g04063 481 MobiDBLite consensus disorder prediction 440 481 - -
Vifa5g04063 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 467 - -
Vifa5g04063 481 SMART rrm1_1 281 353 IPR000504 GO:0003723
Vifa5g04063 481 SMART rrm1_1 185 262 IPR000504 GO:0003723
Vifa5g04063 481 SMART rrm1_1 105 178 IPR000504 GO:0003723
Vifa5g04063 481 SMART rrm2_1 105 178 IPR003954 GO:0003676
Vifa5g04063 481 SUPERFAMILY RNA-binding domain, RBD 101 360 IPR035979 GO:0003676
Vifa5g04063 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Vifa5g04063 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Vifa5g04063 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Vifa5g04063 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Vifa5g04063 481 MobiDBLite consensus disorder prediction 57 91 - -
Vifa5g04063 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Vifa5g04063 481 MobiDBLite consensus disorder prediction 8 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04063 Vifa-Chr5 1287077367 1287082269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04063 106 457 Eukaryotic Initiation Factors Gene Family AT2G23350 24.870 8.27e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04063 K13161 - gmx:100800974 706.827