Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g04063 | ATGTCGGAAGGTGCGGAAATTGACGAGCGTGTTGACCTCGATGAGGAACATTATATGGAAGAAATGGATGACGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGGTGAAGAAAATGAGTACGAGGAGTCAGCGGTAGATGTTGATGGGAAAGAACAATTTCCTGAAGGAGAAAAGAGTGACCGTGCTTCTGAAGAAGATGAGCGAAAATCACCTCTTATTGATGAGGAGGAAAGAGAGAAGTACGATAAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTATTTATTGGTGGACTTCCTCGGGATACATGTGATGATGATTTAAGGGAATTGTGTGCACCAATGGGTGATATTGTTGAGATTAAACTAATCAAAGACAGGGAAACCGGAGACAGCAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGAGGCACAAAAGGCCATTGAAGATATACATAACAAGGAATTTAAGAGCAAAACATTGAGGTGTTCGCTGTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGTCAGAGGATGAGTTTAGGAAAGCCGTTGAGGCTGTTGGTCCAGGGGTTGAAAGCATTGACCTCATAAAGGACCCTCAAAATCAAAGCAAAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAATGCTTGTGCTGATTATTCACGACAAAAGATGTCAAATTCGAGTTTCAAGCTAGATGGAAATACACCAACTGTGACATGGGCAGATCCAAAGACCTCACCTGACAATTCTGCTGCTTCTTCACAGGTTAAAGCTCTGTATGTGAAAAACATACCTGAGAATGTTACTACTGATCAACTAAAGGAGCTATTTCAGCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCCGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTTATGGTCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGGGTACAATCCTGGACTCCATCCTACCCATCTTCCACATCCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTATAGGGGCTGGATATGGTGTTGCTGCTGCTGGTTATCAACAGCCAATGATATACGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGACGGCCGAATTGGCTATGTCCTCCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCCCGCAGAAATGACCGGGGAAATGGTCCAGGTGGTCAGCCAGGGCGTGGAGGAGGTAGTGGTAATGATGAAGGAAATCGTAACAGAAGGTATCGACCCTATTAG | 1446 | 0.4378 | MSEGAEIDERVDLDEEHYMEEMDDDVEEQIDDDGVDGGEDENAEGSGEENEYEESAVDVDGKEQFPEGEKSDRASEEDERKSPLIDEEEREKYDKLLALPPHGSEVFIGGLPRDTCDDDLRELCAPMGDIVEIKLIKDRETGDSKGYAFVAFKTKEEAQKAIEDIHNKEFKSKTLRCSLSETKHRLFIGNVPKTWSEDEFRKAVEAVGPGVESIDLIKDPQNQSKNRGFAFVLYYNNACADYSRQKMSNSSFKLDGNTPTVTWADPKTSPDNSAASSQVKALYVKNIPENVTTDQLKELFQRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIYGQALEVVIAKPQAEKKPDGGYGYNPGLHPTHLPHPGYGNFSGNLYGSIGAGYGVAAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQPGRGGGSGNDEGNRNRRYRPY | 481 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g04063 | 481 | SUPERFAMILY | RNA-binding domain, RBD | 182 | 269 | IPR035979 | GO:0003676 | |
Vifa5g04063 | 481 | FunFam | Heterogeneous nuclear ribonucleoprotein Q isoform A | 8 | 184 | - | - | |
Vifa5g04063 | 481 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Vifa5g04063 | 481 | Gene3D | - | 185 | 265 | IPR012677 | - | |
Vifa5g04063 | 481 | CDD | RRM_SF | 106 | 178 | - | - | |
Vifa5g04063 | 481 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 185 | 265 | - | - | |
Vifa5g04063 | 481 | Gene3D | - | 266 | 385 | IPR012677 | - | |
Vifa5g04063 | 481 | Gene3D | - | 9 | 184 | IPR012677 | - | |
Vifa5g04063 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 104 | 182 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | MobiDBLite | consensus disorder prediction | 440 | 481 | - | - | |
Vifa5g04063 | 481 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 12 | 467 | - | - | |
Vifa5g04063 | 481 | SMART | rrm1_1 | 281 | 353 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | SMART | rrm1_1 | 185 | 262 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | SMART | rrm1_1 | 105 | 178 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | SMART | rrm2_1 | 105 | 178 | IPR003954 | GO:0003676 | |
Vifa5g04063 | 481 | SUPERFAMILY | RNA-binding domain, RBD | 101 | 360 | IPR035979 | GO:0003676 | |
Vifa5g04063 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 252 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 282 | 350 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 106 | 176 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 184 | 266 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | MobiDBLite | consensus disorder prediction | 57 | 91 | - | - | |
Vifa5g04063 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 280 | 357 | IPR000504 | GO:0003723 | |
Vifa5g04063 | 481 | MobiDBLite | consensus disorder prediction | 8 | 56 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g04063 | Vifa-Chr5 | 1287077367 | 1287082269 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g04063 | 106 | 457 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 24.870 | 8.27e-19 | 87.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g04063 | K13161 | - | gmx:100800974 | 706.827 |