Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04056 ATGGGTCAGTGTTACGGCAAAAATATTTCCTCCGCCGGTAACGATAACCGCCAAAACGCAGAAACCACCATAATTGCCACCACCGAGTTTCATCCTTCTCCGTTACCAGGGATTCCGTCTGTCAAGACTACTCCAGCTCGCTCGTCCTCGCACGCTAGTCCGTGGCCTAGTCCCTATCCTCATGGAGTGAACCCGAGTCCTTCGCCGGCTAGAGCCTCCACGCCGAGAAGATTCTTCCGGCGGCCGTTTCCTCCGCCTTCTCCGGCGAAGCATATAAGGGAGTCGTTGGCGAAGAGGTTAGGGAAGGGGAAGCCGAAGGAGGGGCCGATACCGGAGGAGCGGGGTGTGGAAGTGGATTCGCAGTCGCTTGATAAGAGTTTTGGGTATAGTAAGAATTTTGGAGCCAAGTATGAGTTGGGGAAGGAAGTGGGACGAGGGCATTTTGGTCATACTTGTTCTGCTAGGGCTAAGAAAGGTGATCTCAAAGACCAACCTGTTGCTGTTAAGATCATTTCCAAGTCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGAAGGGAAGTGAAGCTGTTGAAGGCTCTGTCAGGCCATAGGCATCTTGTCAAATTTCACGATGCTTGTGAGGATGCCAATAATGTCTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGAGGAGGAAGGTATACCGAGGAGGATGCAAAAGTTATTGTTTTGCAGATTCTAAGTGTAGCAGCCTTTTGTCATCTTCAAGGTGTCGTGCATCGTGACCTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATTAGGCCAGAGGAGCGGTTGAACGACATTGTCGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTACAGTGTGGAAGCAGATATATGGAGTATTGGCGTCATCACCTTCATCTTATTATGTGGAAGTCGTCCATTCTGGGCACGAACAGAATCTGGAATCTTTCGTACAGTTCTAAGAGCTGATCCTAACTTCGATGATTTACCTTGGCCATCTGTGTCTCCAGAGGCAAAGGACTTCGTTAAAAGGCTCCTTAACAAGGACTACCGGAAAAGAATGACGGCTGCTCAAGCTCTAACTCACCCTTGGTTGAGGGACGAAAGCCGTCCTATCCCTTTAGATATACTGATTTATAAGTTGGTGAAATCTTATCTTCACGCAACACCATTCAAACGCGCAGCAGTGAAGGCTCTTTCAAAAGCATTGACAGAGGATCAGTTAGTGTATCTTAGAGCACAATTCAGATTGTTGGAACCAAATAGAGACGGGCACGTCTCTCTCGACAACTTCAAAATGGCTCTTGCACGCCATGCAACTGAAGCCATGAGGGAGTCGAGGGTTCTTGACATCATACATACGATGGAACCACTTGCCTATAGAAAGATGGATTTCGAAGAATTTTGTGCAGCTGCGACGAGCACATATCAACTGGAGGCACTTGATAGGTGGGAAGATATTGCCTGCACTGCATTTGAACATTTCGAGAGTGAGGGAAACCGTGTGATATCGATCGAAGAATTAGCAAGAGAGCTAAATCTTGGTCCATCAGCGTATTCAGTTCTGAGAGATTGGATTCGAAATACTGACGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGCGTGACTCTGCGGAGTTCTGTTCCCAGACCTCGTCAGTCTTGA 1776 0.469 MGQCYGKNISSAGNDNRQNAETTIIATTEFHPSPLPGIPSVKTTPARSSSHASPWPSPYPHGVNPSPSPARASTPRRFFRRPFPPPSPAKHIRESLAKRLGKGKPKEGPIPEERGVEVDSQSLDKSFGYSKNFGAKYELGKEVGRGHFGHTCSARAKKGDLKDQPVAVKIISKSKMTTAIAIEDVRREVKLLKALSGHRHLVKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVAAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPEERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITFILLCGSRPFWARTESGIFRTVLRADPNFDDLPWPSVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDESRPIPLDILIYKLVKSYLHATPFKRAAVKALSKALTEDQLVYLRAQFRLLEPNRDGHVSLDNFKMALARHATEAMRESRVLDIIHTMEPLAYRKMDFEEFCAAATSTYQLEALDRWEDIACTAFEHFESEGNRVISIEELARELNLGPSAYSVLRDWIRNTDGKLSLLGYTKFLHGVTLRSSVPRPRQS 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04056 591 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Vifa5g04056 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vifa5g04056 591 FunFam CDPK-related kinase 3 129 301 - -
Vifa5g04056 591 CDD STKc_CAMK 136 398 - -
Vifa5g04056 591 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Vifa5g04056 591 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 564 - -
Vifa5g04056 591 MobiDBLite consensus disorder prediction 1 119 - -
Vifa5g04056 591 SUPERFAMILY EF-hand 425 578 IPR011992 -
Vifa5g04056 591 SUPERFAMILY Protein kinase-like (PK-like) 136 422 IPR011009 -
Vifa5g04056 591 Pfam Protein kinase domain 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g04056 591 FunFam CDPK-related kinase 1 435 507 - -
Vifa5g04056 591 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g04056 591 Gene3D Transferase(Phosphotransferase) domain 1 226 409 - -
Vifa5g04056 591 SMART serkin_6 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g04056 591 FunFam CDPK-related kinase 1 130 225 - -
Vifa5g04056 591 FunFam Calcium-dependent protein kinase SK5 309 406 - -
Vifa5g04056 591 MobiDBLite consensus disorder prediction 92 119 - -
Vifa5g04056 591 ProSiteProfiles Protein kinase domain profile. 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g04056 591 Gene3D - 417 579 - -
Vifa5g04056 591 Gene3D Phosphorylase Kinase; domain 1 130 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04056 Vifa-Chr5 1285954107 1285959676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04056 19 583 EF-hand Containing Proteins AT3G50530 60.500 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa5g04056 Pkinase 3.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04056 - - psat:127132076 1134.4