Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04054 ATGTTGAATCTTCCATGCCAACAAACTTGTATGGATACTACAAAACAGAAGCATGAATCATCTTCTCAACTTGTACTTGATCTAAGTCTCTCTAGCAAAGATTCATGTGACGATGAATCAAAGCCGGAACTAAACCTCCTCAACTGTTTCCATGTGAATTTATCAGAAAGCTCGTCGGAATCAAGTCATGAAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTACTGCCAAAGAAAATTCTATAGCTCGCAAGCACTAGGAGGACACCAGAATGCTCATAAGCGCGAAAGAACTTTAGCGAGAAGAGGCTATACAACTAGCATGGCTTCTTCTCTCCCTTCTTACGGCTTATGTAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTACCAAACACAAAAACCCTTTTTTAGATTTTGTTCAAATGGACAGAATGTTTGGAAAAGACAGATTTTTGAATCACAACTGGCAATTGGAAAGGCTCCATCTGGAACTGAACCATTTTTTGGCAGTGGCATTCAAAGGGTAGCTATGTTTCCTAAAAGTCTTGTGAATGAAGATTTGGACTTGGAGCTCTAA 597 0.3869 MLNLPCQQTCMDTTKQKHESSSQLVLDLSLSSKDSCDDESKPELNLLNCFHVNLSESSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMASSLPSYGLCNKSLGIQVHSMINKPSYQTQKPFFRFCSNGQNVWKRQIFESQLAIGKAPSGTEPFFGSGIQRVAMFPKSLVNEDLDLEL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04054 198 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Vifa5g04054 198 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Vifa5g04054 198 Gene3D Classic Zinc Finger 51 114 - -
Vifa5g04054 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Vifa5g04054 198 FunFam Zinc finger protein 2 51 116 - -
Vifa5g04054 198 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 171 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04054 Vifa-Chr5 1285808404 1285809077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04054 12 166 C2H2 Transcription Factor Family AT5G10970 43.976 8.81e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g04054 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04054 - - mtr:25491181 270.011