Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04042 ATGGGTTTCCGATTACCTTCTATTAGACGTGCTTCTTTTATAGGTAGCCAGGCATCGTCAAAAGCTTTGAATGTGCCACCAAAAGGTTATTTTGCAGTGTATGTTGGAGAGAAAATGAAGCGCTTTGTTATCCCTATGTCTTACTTGAACCAACCTTCATTTCAAGACTTGTTGGGTGAAGCTGAGGAAGAATTCAAATATGACCATCCGACGGGCGGCCTCACAATTCCTTGTTCCGAAGATAAGACTTTTCATAATTTGGTCAATAAGTGGTTGTTCAAGCAAGATGCTGTATGCTCGTTCAAGAATGATAATGGAATCAAGAACCTCCTTGCTTTCTCTCCAACATACACGGCAAGATACCCTTTTGGGACTTCAACTTGTTTGCTAGATGATGATCGTCTAATACCAGGATTAGAAAGAGTCTGCTGCACAGAAGTTAAAACCATTGAATAA 456 0.4035 MGFRLPSIRRASFIGSQASSKALNVPPKGYFAVYVGEKMKRFVIPMSYLNQPSFQDLLGEAEEEFKYDHPTGGLTIPCSEDKTFHNLVNKWLFKQDAVCSFKNDNGIKNLLAFSPTYTARYPFGTSTCLLDDDRLIPGLERVCCTEVKTIE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04042 151 Pfam Auxin responsive protein 16 81 IPR003676 GO:0009733
Vifa5g04042 151 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 20 84 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04042 Vifa-Chr5 1284158782 1284161916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04042 27 88 Calmodulin-binding Proteins AT3G43120 53.226 3.69e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04042 - K14488 gmx:100797634 134.42