Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04039 ATGGTGCTTGATTTGTTGATTTCTGGTCCTGCTTCGGAAGCTATTTCTCAAATTATAGATTCGGTTTCTGAGTTTGTGTATTCTGTTGACAATGTTCTTGTGAAGAAGGATATTTTTAAGGAACTTGCAGAATATTTGCAAAGAATTGAACCTATTTTGAAGCAGTTAAGGAGGGAAAAGGTTAGTGATTCTGAGACATTCAACCATGCCATTGAGATTCTGAATCGTGAAATCAAAGAAGCGAAGAAACTGGTTCAAGAATGTAGTAAGAAGAGCAAGGTGTATCTTTTAGTGAACTGTAGAACTGTTGTTAAGCGCTTGAAACATAATACGGGTGAGATCAGTAGGGCGCTAGGTCTTCTTCCTTTGGCTACGTCGGGTCTTTCGGCAGGAATAGTTGAAGAAATTAACAAGTTATGTGACAATATGCAGGAAGCTGAGTTTAAGGCAGCTGTATCGGAAGAGGAGATTTTAGAGAAAATCGAGGCAGGAATACAAGAAAAGAATTTCGACCGCTCCTATGCAAATAATTTGCTGCATCTCATTGCAGATGCTGTTGGGATTACAAAAGAGCGGTCGGAGTTAAAAAAAGAGCTCGAAGAGTTTAAAAATGAAATTGAAAACGAGAAAGATCGGGCTGAAGCCATACAGATGGATCAAATCATCGCTTTGTTGGAAAGGTCTGATGCAGCTTCATCAACTAAGGAAAAGGAGCTCAAGTACTTTGCGAAACGTAATTCTTTGGGTACTCAAACCTTGGAGCCTTTACATTCCTTTTATTGCCAGATTACAGGCGATGTTATGGTTGACCCTGTGGAAATTTCGTCGGGGCAAACATTTGAGCGAAGTGCAATTGAAAAGTGGTTTGCGGAAGGACACAAAAAGTGTCCTCTGACTTCCATTACTTTAGACACATTGGTTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGAAATACTATGATTACAATTGCTTCACTGAAAGAAAAAATCCAGTCTGGAGATGAAGTTGGAGTATTAAGTTGTTTGCAAACTCTTCATGATTTGTGCGAACAGAAAGATCAGCACAGAGAATGGGTGGTACTGGAGAATTATATACCTGTTCTTATCCCAAATTCTTGCTGA 1143 0.3893 MVLDLLISGPASEAISQIIDSVSEFVYSVDNVLVKKDIFKELAEYLQRIEPILKQLRREKVSDSETFNHAIEILNREIKEAKKLVQECSKKSKVYLLVNCRTVVKRLKHNTGEISRALGLLPLATSGLSAGIVEEINKLCDNMQEAEFKAAVSEEEILEKIEAGIQEKNFDRSYANNLLHLIADAVGITKERSELKKELEEFKNEIENEKDRAEAIQMDQIIALLERSDAASSTKEKELKYFAKRNSLGTQTLEPLHSFYCQITGDVMVDPVEISSGQTFERSAIEKWFAEGHKKCPLTSITLDTLVLRPNKTLKQSIEEWKDRNTMITIASLKEKIQSGDEVGVLSCLQTLHDLCEQKDQHREWVVLENYIPVLIPNSC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04039 380 Coils Coil 64 91 - -
Vifa5g04039 380 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vifa5g04039 380 CDD RING-Ubox_PUB 259 308 IPR045210 -
Vifa5g04039 380 Coils Coil 185 219 - -
Vifa5g04039 380 Gene3D - 11 126 IPR036537 GO:0007166
Vifa5g04039 380 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vifa5g04039 380 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 14 97 IPR008808 -
Vifa5g04039 380 Coils Coil 136 156 - -
Vifa5g04039 380 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 376 - -
Vifa5g04039 380 Pfam MCAfunc domain 33 141 IPR045766 -
Vifa5g04039 380 CDD MLKL_NTD 16 126 - -
Vifa5g04039 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 337 IPR013083 -
Vifa5g04039 380 SUPERFAMILY RING/U-box 246 327 - -
Vifa5g04039 380 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04039 Vifa-Chr5 1283011988 1283013130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04039 15 327 U-box Gene Family AT5G42340 26.349 2.67e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04039 - - psat:127076110 516.924