Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04036 ATGGAAGGGTTAACTCCGAGTTCATGCACTAGGGCTGAAATATTAGAGAAGAAAACAAAAACAGAAGAAGCATTGAATTGTCCAAGGTGCAAATCAACAAACACAAAGTTCTGTTATTACAACAACTATAGCCTCACACAACCAAGATACTTATGCAAAACTTGCAAAAGGTATTGGACACAAGGTGGTTCACTAAGAAATATCCCAGTTGGAGGTAGTTCTAGGAAGAACAACAAACTCATAGCATCATCAGCTATTTCTTCATATAACATGATTAAAGGTCATGATCTTAGTTTGGCTTCTACTTGTGTTCCTAATTCCTTAATGATGATGTCAAGTTCGAGCTCAGATGGACAATATCATCCATGGTTTTCCATGCAGGAAATGAAACCAAATCTTGGATTTTCAGTTGGAGAGATGAATAAACTTTGCAATACAAATGAGTTACAGGTTGATCAAGTGGAACATAATGAAGAACAAGAAAACTCAACAAGGTATAATTGGAATGGAGTCATAGATGAAGGGTCATCATGGTAA 537 0.3631 MEGLTPSSCTRAEILEKKTKTEEALNCPRCKSTNTKFCYYNNYSLTQPRYLCKTCKRYWTQGGSLRNIPVGGSSRKNNKLIASSAISSYNMIKGHDLSLASTCVPNSLMMMSSSSSDGQYHPWFSMQEMKPNLGFSVGEMNKLCNTNELQVDQVEHNEEQENSTRYNWNGVIDEGSSW 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04036 178 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Vifa5g04036 178 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Vifa5g04036 178 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Vifa5g04036 178 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 143 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04036 Vifa-Chr5 1282973851 1282974387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04036 12 132 C2C2-Dof Transcription Factor Family AT3G61850 48.872 1.18e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa5g04036 zf-Dof 3.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04036 - - psat:127128863 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04036 5 1282973851 1282974387 Vifa4g01055 4 308294094 308294948 PCT