Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04034 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCATCGAGGTCCGTGGACTTCTCGGGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGCGATCACTTCCAAAAAGCGCTGGGCTTCTGAGATGCGGAAAAAGTTGCAGACTTCGATGGATGAACTATCTGAGGCCAGATATAAAGAGAGGAAACATAACTCCTGAAGAAGATGATCTTATTATAAGAATGCATTCGCTTCTTGGTAATAGATGGTCTCTTATTGCCGGAAGATTACCAGGAAGAACAGATAATGAGATAAAGAATTACTGGAACACGCATCTCATTAAAAAGCTCAAAAATCAAGAACAACCAGAGCAGGAGAAGAAGAAGAAGAAAAAGAAACAGAAGAATGAAAAGAACAAAATCAAAACGAAAGTATCAAAAGATTCAGAGAAGAAGACCTTAGTTTATCTACCAAAGGCGACGAGGGTCAAGAAGAGTTTATCATATGTAATACCAAGAACTGATAATACCATAAACATGGAACCAAACTCAGTAACAACAAGCCAAAAGGAAGAAGAGCAGAGAGTAGAAACAAAAGAGGGAGAAAATGATGGGTTTGGATTGTTCTTTGGTGAACAGTGCCATGAAGATTTGGTCAACAACAATGACATGGAATGCCAAACTGGTTTTCTTGAGAAGTTGTATGAAGAGTACTTGCAGCTATTGAAGAATGAAGAAAATCATGAAAAATTATTAGATTCTTTTGCTGAGTCTTTATTGGTGTGA 783 0.3831 MGRAPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKSAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLIKKLKNQEQPEQEKKKKKKKQKNEKNKIKTKVSKDSEKKTLVYLPKATRVKKSLSYVIPRTDNTINMEPNSVTTSQKEEEQRVETKEGENDGFGLFFGEQCHEDLVNNNDMECQTGFLEKLYEEYLQLLKNEENHEKLLDSFAESLLV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04034 260 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa5g04034 260 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa5g04034 260 FunFam Myb transcription factor 11 67 - -
Vifa5g04034 260 SMART sant 13 63 IPR001005 -
Vifa5g04034 260 SMART sant 66 114 IPR001005 -
Vifa5g04034 260 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa5g04034 260 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa5g04034 260 MobiDBLite consensus disorder prediction 118 144 - -
Vifa5g04034 260 CDD SANT 16 61 IPR001005 -
Vifa5g04034 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Vifa5g04034 260 Coils Coil 230 250 - -
Vifa5g04034 260 MobiDBLite consensus disorder prediction 177 196 - -
Vifa5g04034 260 Gene3D - 14 66 - -
Vifa5g04034 260 FunFam Transcription factor TT2 70 151 - -
Vifa5g04034 260 Coils Coil 123 143 - -
Vifa5g04034 260 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa5g04034 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa5g04034 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa5g04034 260 CDD SANT 71 112 IPR001005 -
Vifa5g04034 260 Gene3D - 71 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04034 Vifa-Chr5 1282641597 1282642507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g04034 1 204 MYB Transcription Factor Family AT4G09460 51.220 2.56e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g04034 Myb_DNA-binding 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04034 K09422 - gmx:778044 298.13