Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g04032 ATGCTGACTGCAAACTATTCGTCAGAAACATCATCGAGTCTTACCTTATCCTCCATCGCCACCGACGAAAAACCGGTTCCGGAGGAACCGCCACAAGTTTCCACCGAGACAGTGAATGTGATACACAATGAACCGCCACAAGAGTTGAATAAGGTGGTGGGAGCGAAACGCAAAAACGACGATTCTGAAGACATTATTTGTCAGCTATCAACCAAGAGGAATGTGACTGTCCGAAATTTCAAAGGGATGCCATTGGTGTCAATTAGGGAGTTCTATCTAAAAGATGGAAAACAGCATCCCACTGCTAAAGGGATAGGTTTACCTTCTGAACAATGGTCAACCTTCAAGAATAGTGTTCCTGCCATTGAGGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGGGCATAATGGCTGGAAAAATGGAGAACCTGTGCCCATTGAGCCTGTGCCCATTGAGCTTGTCTCTATTGAGCCTGTGCCCATTGAGCCTGTCTCTATTGAGCCTGTGCCCATTGAGCCTGTCTCTGTTGAGCCCGTGCCCATTGAGCCTGTCTCTATTGAGCCCGTGCCCATTGAGCCTGTGCCCATTGAGCCTGTCTCTATTGAGCCTGTGCCCATTGAGCCTGTCTCTATTGAGCCTGTGCCCATTGAGCCTGTCTCTATTGAGCCTGTGCCCATTGAGATTGTCCCTATTGAGATCGTCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGATTGAATTACTCTTGAAACAGTTAAAGATTAGTTATGTGCTTACCGAGCCATCCCCAATTGCTACGTCAGGGGAAAACAATGATAGTGCTGAAGAAATTTCTAAAACCAAAGCTGCTGAAAAGATATGGGTAAATGATGATTTAGTGTGTCGTCGCCAACATCTTGAGCCATTTAGCTGA 927 0.4606 MLTANYSSETSSSLTLSSIATDEKPVPEEPPQVSTETVNVIHNEPPQELNKVVGAKRKNDDSEDIICQLSTKRNVTVRNFKGMPLVSIREFYLKDGKQHPTAKGIGLPSEQWSTFKNSVPAIEEAITKLEGRIRSGHNGWKNGEPVPIEPVPIELVSIEPVPIEPVSIEPVPIEPVSVEPVPIEPVSIEPVPIEPVPIEPVSIEPVPIEPVSIEPVPIEPVSIEPVPIEIVPIEIVRFDGKNYQVWAEQIELLLKQLKISYVLTEPSPIATSGENNDSAEEISKTKAAEKIWVNDDLVCRRQHLEPFS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g04032 308 Pfam Transcriptional Coactivator p15 (PC4) 67 117 IPR003173 GO:0003677|GO:0006355
Vifa5g04032 308 MobiDBLite consensus disorder prediction 1 34 - -
Vifa5g04032 308 SUPERFAMILY ssDNA-binding transcriptional regulator domain 66 128 IPR009044 GO:0003677|GO:0006355
Vifa5g04032 308 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g04032 308 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 42 132 IPR045125 GO:0003713|GO:0060261
Vifa5g04032 308 Gene3D Transcriptional Coactivator Pc4; Chain A 56 134 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g04032 Vifa-Chr5 1280886496 1280889565 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vifa5g04032 PC4 8.5e-20 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g04032 K25815 - psat:127128865 187.578